Gene detail information of Glyur001299s00039013.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G05160.11.00E-162AMP-dependent synthetase and ligase family protein
NRXP_004497538.10PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cicer arietinum]
COGYP_003291469.14.00E-120AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
Swissprottr|Q9M0X9|4CLL7_ARATH04-coumarate--CoA ligase-like 7
trEMBLtr|A0A072VK34|A0A072VK34_MEDTR04-coumarate:CoA ligase-like protein {ECO:0000313|EMBL:KEH42182.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012991930124091-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K019044CL EC:6.2.1.12 Phenylalanine metabolism map00360
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001299s00039013.1PF00501.23AMP-binding434528.00E-101
Glyur001299s00039013.1PF13193.1AMP-binding_C4615363.80E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.446
SRR1783600control0.441
SRR1783602moderate drought stress1.164
SRR1811619moderate drought stress1.142

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.457
DRR006520Root Summer glycyrrhizin high producing strain0.440
DRR006521Root Winter glycyrrhizin high producing strain0.574
DRR006522Root Winter glycyrrhizin high producing strain0.589
DRR006523Root Summer glycyrrhizin low producing strain0.398
DRR006524Root Summer glycyrrhizin low producing strain0.396
DRR006525Leaf Summer glycyrrhizin high producing strain0.892
DRR006526Leaf Summer glycyrrhizin high producing strain0.806

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.324
SRR2868004Drought Stress(Tissue:root)0.600
SRR2967015Control (Tissue:root)0.737

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.947
SRR9715740Leave6.602
SRR9715741Leave23.852
SRR9715739Root0.569
SRR9715742Root0.873
SRR9715743Root1.202

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.806
SRR8749028MeJA induced 9h17.638
SRR8749029MeJA induced 9h15.775
SRR8749030Uninduced33.617
SRR8749031Uninduced65.113
SRR8749032Uninduced28.643

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.525
SRR8400027Control-Root2.071

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved