Gene detail information of Glyur001303s00026785.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G78570.10rhamnose biosynthesis 1
NRKHN36936.10Putative rhamnose biosynthetic enzyme 1 [Glycine soja]
COGYP_007768743.19.00E-92dTDP-glucose 4,6-dehydratase [Coprococcus catus GD/7]
Swissprottr|Q9SYM5|RHM1_ARATH0UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000305|PubMed:17190829}
trEMBLtr|I1LVA7|I1LVA7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G36290.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0130347728497-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12450RHM EC:4.2.1.76 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0009225  nucleotide-sugar metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0008460  dTDP-glucose 4,6-dehydratase activity

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001303s00026785.1PF01370.16Epimerase763182.10E-54
Glyur001303s00026785.1PF04321.12RmlD_sub_bind4526713.60E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control83.467
SRR1783600control84.729
SRR1783602moderate drought stress43.929
SRR1811619moderate drought stress43.646

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain84.014
DRR006520Root Summer glycyrrhizin high producing strain83.620
DRR006521Root Winter glycyrrhizin high producing strain49.507
DRR006522Root Winter glycyrrhizin high producing strain48.132
DRR006523Root Summer glycyrrhizin low producing strain112.041
DRR006524Root Summer glycyrrhizin low producing strain111.435
DRR006525Leaf Summer glycyrrhizin high producing strain41.475
DRR006526Leaf Summer glycyrrhizin high producing strain41.265

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)99.883
SRR2868004Drought Stress(Tissue:root)79.204
SRR2967015Control (Tissue:root)86.943

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave86.001
SRR9715740Leave66.102
SRR9715741Leave115.672
SRR9715739Root29.666
SRR9715742Root113.784
SRR9715743Root101.962

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h149.287
SRR8749028MeJA induced 9h267.859
SRR8749029MeJA induced 9h154.121
SRR8749030Uninduced253.894
SRR8749031Uninduced131.028
SRR8749032Uninduced116.966

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root70.828
SRR8400027Control-Root98.905

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved