Gene detail information of Glyur001304s00038572.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20510.13.00E-82alfin-like 5
NRXP_006371893.15.32E-129hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
Swissprottr|Q5XEM9|ALFL5_ARATH3.00E-114PHD finger protein ALFIN-LIKE 5, N-terminally processed
trEMBLtr|U5FFQ7|U5FFQ7_POPTR2.00E-129Uncharacterized protein {ECO:0000313|EMBL:ERP49690.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013046479769549-


Gene family

Gene familysubfamily
Transcription Factors FamilyAlfin-like


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0042393  histone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001304s00038572.1PF12165.3DUF3594131511.10E-72
Glyur001304s00038572.1PF00628.24PHD2012507.10E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.285
SRR1783600control0.286
SRR1783602moderate drought stress0.048
SRR1811619moderate drought stress0.049

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.870
DRR006520Root Summer glycyrrhizin high producing strain0.722
DRR006521Root Winter glycyrrhizin high producing strain0.021
DRR006522Root Winter glycyrrhizin high producing strain0.141
DRR006523Root Summer glycyrrhizin low producing strain0.428
DRR006524Root Summer glycyrrhizin low producing strain0.429
DRR006525Leaf Summer glycyrrhizin high producing strain0.439
DRR006526Leaf Summer glycyrrhizin high producing strain0.831

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.920
SRR2868004Drought Stress(Tissue:root)0.544
SRR2967015Control (Tissue:root)0.281

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.161
SRR9715740Leave0.184
SRR9715741Leave0.242
SRR9715739Root0.512
SRR9715742Root0.003
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.102
SRR8749028MeJA induced 9h0.879
SRR8749029MeJA induced 9h2.407
SRR8749030Uninduced0.163
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.609
SRR8400027Control-Root0.587

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved