Gene detail information of Glyur001310s00030806.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57970.23.00E-74DNA glycosylase superfamily protein
NRXP_003530263.10PREDICTED: uncharacterized protein LOC100805836 [Glycine max]
COGYP_006759958.16.00E-61DNA-3-methyladenine glycosylase I Tag [Desulfobacula toluolica Tol2]
trEMBLtr|I1KGT2|I1KGT2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G02620.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013101635920821-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01246tag EC:3.2.2.20 Base excision repair map03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair


molecular_function

GO:0003824  catalytic activity

GO:0008725  DNA-3-methyladenine glycosylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001310s00030806.1PF03352.8Adenine_glyco1593342.00E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.732
SRR1783600control3.704
SRR1783602moderate drought stress2.981
SRR1811619moderate drought stress3.051

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.533
DRR006520Root Summer glycyrrhizin high producing strain6.469
DRR006521Root Winter glycyrrhizin high producing strain1.890
DRR006522Root Winter glycyrrhizin high producing strain1.816
DRR006523Root Summer glycyrrhizin low producing strain5.793
DRR006524Root Summer glycyrrhizin low producing strain5.885
DRR006525Leaf Summer glycyrrhizin high producing strain1.925
DRR006526Leaf Summer glycyrrhizin high producing strain1.911

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.234
SRR2868004Drought Stress(Tissue:root)6.489
SRR2967015Control (Tissue:root)7.944

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.051
SRR9715740Leave2.382
SRR9715741Leave1.676
SRR9715739Root2.405
SRR9715742Root5.758
SRR9715743Root4.048

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.954
SRR8749028MeJA induced 9h14.262
SRR8749029MeJA induced 9h9.082
SRR8749030Uninduced3.285
SRR8749031Uninduced1.865
SRR8749032Uninduced3.910

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.816
SRR8400027Control-Root9.723

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved