Gene detail information of Glyur001316s00033466.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01940.1 | 8.00E-76 | C2H2-like zinc finger protein |
| NR | XP_007152626.1 | 0 | hypothetical protein PHAVU_004G145900g [Phaseolus vulgaris] |
| Swissprot | tr|F4IPE3|IDD15_ARATH | 5.00E-123 | Protein SHOOT GRAVITROPISM 5 |
| trEMBL | tr|V7C5Q2|V7C5Q2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW24620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01316 | 58427 | 62150 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.116 |
| SRR1783600 | control | 8.399 |
| SRR1783602 | moderate drought stress | 8.489 |
| SRR1811619 | moderate drought stress | 8.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.825 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.840 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.104 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.154 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.821 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.822 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.754 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.852 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.167 |
| SRR2967015 | Control (Tissue:root) | 3.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.751 |
| SRR9715740 | Leave | 6.725 |
| SRR9715741 | Leave | 3.844 |
| SRR9715739 | Root | 0.548 |
| SRR9715742 | Root | 3.338 |
| SRR9715743 | Root | 2.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.765 |
| SRR8400027 | Control-Root | 4.185 |