Gene detail information of Glyur001319s00033790.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14180.1 | 4.00E-51 | RING/U-box superfamily protein |
| NR | XP_004490108.1 | 0 | PREDICTED: uncharacterized protein LOC101512464, partial [Cicer arietinum] |
| trEMBL | tr|A0A061EA54|A0A061EA54_THECC | 1.00E-174 | RING/U-box superfamily protein, putative isoform 1 {ECO:0000313|EMBL:EOY01890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01319 | 46884 | 51720 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.541 |
| SRR1783600 | control | 16.511 |
| SRR1783602 | moderate drought stress | 13.188 |
| SRR1811619 | moderate drought stress | 13.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.285 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.374 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.914 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.757 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.671 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.576 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.001 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.190 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.912 |
| SRR2967015 | Control (Tissue:root) | 17.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.064 |
| SRR9715740 | Leave | 6.816 |
| SRR9715741 | Leave | 4.862 |
| SRR9715739 | Root | 10.324 |
| SRR9715742 | Root | 13.393 |
| SRR9715743 | Root | 12.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.694 |
| SRR8749028 | MeJA induced 9h | 10.465 |
| SRR8749029 | MeJA induced 9h | 9.361 |
| SRR8749030 | Uninduced | 3.695 |
| SRR8749031 | Uninduced | 2.933 |
| SRR8749032 | Uninduced | 2.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.413 |
| SRR8400027 | Control-Root | 32.001 |