Gene detail information of Glyur001321s00031438.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16050.12.00E-101pyridoxine biosynthesis 1.2
NRXP_004506848.13.64E-147PREDICTED: probable pyridoxal biosynthesis protein PDX1.2-like [Cicer arietinum]
COGYP_428892.16.00E-99pyridoxal biosynthesis lyase PdxS [Moorella thermoacetica ATCC 39073]
Swissprottr|Q9ZNR6|PDX12_ARATH4.00E-133Probable pyridoxal biosynthesis protein PDX1.2
trEMBLtr|B9GFP4|B9GFP4_POPTR1.00E-144Pyridoxin biosynthesis PDX1-like protein 2 {ECO:0000313|EMBL:EEE84506.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013212449425441-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06215pdxS, pdx1 EC:4.3.3.6 Vitamin B6 metabolism map00750


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0042819  vitamin B6 biosynthetic process

GO:0042823  pyridoxal phosphate biosynthetic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001321s00031438.1PF01680.12SOR_SNZ292339.50E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.131
SRR1783600control7.401
SRR1783602moderate drought stress10.317
SRR1811619moderate drought stress9.972

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.419
DRR006520Root Summer glycyrrhizin high producing strain7.486
DRR006521Root Winter glycyrrhizin high producing strain8.878
DRR006522Root Winter glycyrrhizin high producing strain8.745
DRR006523Root Summer glycyrrhizin low producing strain8.577
DRR006524Root Summer glycyrrhizin low producing strain8.832
DRR006525Leaf Summer glycyrrhizin high producing strain6.656
DRR006526Leaf Summer glycyrrhizin high producing strain6.708

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.262
SRR2868004Drought Stress(Tissue:root)10.576
SRR2967015Control (Tissue:root)9.636

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.175
SRR9715740Leave4.672
SRR9715741Leave6.412
SRR9715739Root21.868
SRR9715742Root16.858
SRR9715743Root18.400

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.100
SRR8749028MeJA induced 9h10.263
SRR8749029MeJA induced 9h10.429
SRR8749030Uninduced1.556
SRR8749031Uninduced1.011
SRR8749032Uninduced3.104

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.383
SRR8400027Control-Root8.247

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved