Gene detail information of Glyur001324s00031591.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09840.6 | 1.00E-42 | shaggy-like protein kinase 41 |
| NR | ACJ85178.1 | 4.69E-51 | unknown [Medicago truncatula] |
| COG | YP_008148427.1 | 1.00E-09 | hypothetical protein SCE1572_09895 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|P51139|MSK3_MEDSA | 5.00E-53 | Glycogen synthase kinase-3 homolog MsK-3 |
| trEMBL | tr|B7FK93|B7FK93_MEDTR | 2.00E-51 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ85178.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01324 | 7149 | 8295 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.5.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001324s00031591.1 | PF00069.20 | Pkinase | 106 | 201 | 8.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.114 |
| SRR1783600 | control | 0.058 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.756 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.715 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.848 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.805 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.350 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.378 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.730 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.613 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.920 |
| SRR2967015 | Control (Tissue:root) | 1.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.377 |
| SRR8749028 | MeJA induced 9h | 0.464 |
| SRR8749029 | MeJA induced 9h | 1.066 |
| SRR8749030 | Uninduced | 0.326 |
| SRR8749031 | Uninduced | 0.447 |
| SRR8749032 | Uninduced | 1.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.015 |
| SRR8400027 | Control-Root | 0.000 |