Gene detail information of Glyur001324s00031598.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68810.1 | 3.00E-61 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_007143790.1 | 2.48E-132 | hypothetical protein PHAVU_007G101900g [Phaseolus vulgaris] |
| Swissprot | tr|Q9S7Y1|BH030_ARATH | 1.00E-95 | Transcription factor bHLH30 |
| trEMBL | tr|V7BD91|V7BD91_PHAVU | 9.00E-133 | Uncharacterized protein {ECO:0000313|EMBL:ESW15784.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01324 | 44439 | 46948 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001324s00031598.1 | PF00010.21 | HLH | 185 | 231 | 1.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.613 |
| SRR1783600 | control | 0.642 |
| SRR1783602 | moderate drought stress | 0.473 |
| SRR1811619 | moderate drought stress | 0.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.009 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.740 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.096 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.291 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.849 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.580 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.397 |
| SRR2967015 | Control (Tissue:root) | 6.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.372 |
| SRR9715740 | Leave | 0.760 |
| SRR9715741 | Leave | 1.342 |
| SRR9715739 | Root | 0.132 |
| SRR9715742 | Root | 0.385 |
| SRR9715743 | Root | 0.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.253 |
| SRR8749028 | MeJA induced 9h | 0.119 |
| SRR8749029 | MeJA induced 9h | 0.142 |
| SRR8749030 | Uninduced | 0.331 |
| SRR8749031 | Uninduced | 0.951 |
| SRR8749032 | Uninduced | 0.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.861 |
| SRR8400027 | Control-Root | 4.600 |