Gene detail information of Glyur001324s00031600.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G68820.16.00E-177Transmembrane Fragile-X-F-associated protein
NRXP_004496204.10PREDICTED: uncharacterized protein LOC101493626 isoform X2 [Cicer arietinum]
Swissprottr|Q9LDD1|BRG3_ARATH6.00E-06Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBLtr|I1LCS2|I1LCS2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G34710.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013245964966524+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001324s00031600.1PF10269.4Tmemb_185A352952.70E-69
Glyur001324s00031600.1PF13920.1zf-C3HC4_33924351.20E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.924
SRR1783600control10.078
SRR1783602moderate drought stress11.124
SRR1811619moderate drought stress10.931

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.197
DRR006520Root Summer glycyrrhizin high producing strain11.311
DRR006521Root Winter glycyrrhizin high producing strain25.300
DRR006522Root Winter glycyrrhizin high producing strain25.157
DRR006523Root Summer glycyrrhizin low producing strain13.192
DRR006524Root Summer glycyrrhizin low producing strain13.179
DRR006525Leaf Summer glycyrrhizin high producing strain9.632
DRR006526Leaf Summer glycyrrhizin high producing strain9.608

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.325
SRR2868004Drought Stress(Tissue:root)25.419
SRR2967015Control (Tissue:root)37.017

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.800
SRR9715740Leave9.180
SRR9715741Leave9.736
SRR9715739Root8.318
SRR9715742Root11.094
SRR9715743Root9.664

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h45.916
SRR8749028MeJA induced 9h65.090
SRR8749029MeJA induced 9h73.172
SRR8749030Uninduced38.280
SRR8749031Uninduced30.852
SRR8749032Uninduced27.719

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.872
SRR8400027Control-Root16.306

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved