Gene detail

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Gene detail information of Glyur001331s00031404.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67750.1	6.00E-173	Pectate lyase family protein
NR	XP_011086701.1	0	PREDICTED: probable pectate lyase 5 [Sesamum indicum]
COG	YP_001628843.1	2.00E-14	hypothetical protein Bpet0241 [Bordetella petrii DSM 12804]
Swissprot	tr\|Q9FXD8\|PLY5_ARATH	0	Probable pectate lyase 5 (Precursor)
trEMBL	tr\|W9S1B9\|W9S1B9_9ROSA	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}

Sequence

Transcript Sequence

>Glyur001331s00031404.1
TGTTCCCTATATATAGTCTAATCTGTCCTCACATTTCTTCACAATCACAAGCATATACTAATACTCCTCCTCTCCTGTTTTTCTGATTGATGGTAGTTCAAGCAGTTATGGCAGTTCCACTCCCATTTATGCTACTCTTTCTACTTCTTGTACCTTCCTTCATTTCCGCACTTCAAGATCCTGAATTAGTAGTCGAACAAGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTGGCATTTCTTTCATGTGGGAGTGGCAACCCAATTGATGATTGTTGGAGGTGTGACCCAAACTGGGACAAGAACCGCCAGCGTCTAGCAGATTGTTCCATTGGGTTTGGTAAGCATGCAATTGGAGGCAGGGATGGTAAGATATATGTGGTAACTGACCCAGGTGATCACCCTGTGAACCCAAAGCCAGGAACTTTAAGATATGGTGTTATCCAAGAGGAGCCATTGTGGATCATATTCAAGCGTGACATGGTGATCAAGCTCAAGCAAGAGCTCATGATGAACTCTTTTAAGACAATTGATGGTAGAGGAGCAAATGTTCACATTGCCGGTGGACCTTGTATTACTATACAGTTTGTGACCAACATTATCATTCATGGGATTAATATTCATGATTGTAAGAGAGGTGGGAATGCTTATGTGAGGGATTCACCTACACATTATGGTTGGAGGACTCTGTCTGATGGTGATGGGGTTTCAATCTTTGGTGGTAGCCATGTTTGGGTTGATCATTGTTCTCTCTCGAATTGCCCCATTACCATCTCCAACAATTTCATGACACGTCATAACAAGGTCATGCTTTTGGGGCACAGTGATTCTTTCACTAGAGACAAGAATATGCAGGTCACCATTGCCTTTAACCATTTTGGAGAAGGGCTAGTTCAGAGAATGCCAAGGCATGGATACTTCCATGTGGTGAACAATGACTACACCCATTGGAAAATGTATGCCATAGGGGGGAGTGCTTCTCCAACAATCAACAGCCAGGGCAATAGATTTCTTGCTCCCAATGACTTGACCTTCAAAGAGGTCACAAAGCGCGAGAATGCAGCACAGAGCCAATGGAAGAAGTGGAATTGGAGGTCTAGTGGGGATTTGTTGTTAAACGGTGCCTTCTTTAGGCCATCAGGAGCAGGTGCATCTTCAAGCTATGCCAGAGCATCGAGTTTGGCAGCAAAACCATCTACCTTAGTCGGTTCTATCACAGCATCAGCTGGATCACTTAACTGCAGAAAGGGCTCTCGCTGCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01331	3213	5191	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	PL1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01728	pel	EC:4.2.2.2	Pentose and glucuronate interconversions	map00040
K01728	pel	EC:4.2.2.2	Quorum sensing	map02024

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001331s00031404.1	PF00544.14	Pec_lyase_C	134	308	1.20E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.135
SRR1783600	control	0.148
SRR1783602	moderate drought stress	0.120
SRR1811619	moderate drought stress	0.108

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.805
DRR006520	Root Summer glycyrrhizin high producing strain	8.884
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.858
DRR006524	Root Summer glycyrrhizin low producing strain	1.887
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.370
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.247

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.644
SRR2868004	Drought Stress(Tissue:root)	10.850
SRR2967015	Control (Tissue:root)	5.952

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.509
SRR9715740	Leave	0.000
SRR9715741	Leave	0.729
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.047

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.056
SRR8749028	MeJA induced 9h	0.099
SRR8749029	MeJA induced 9h	0.266
SRR8749030	Uninduced	0.111
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.117
SRR8400027	Control-Root	1.962