Gene detail information of Glyur001333s00028397.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18350.1 | 8.00E-29 | homeobox protein 24 |
| NR | XP_003537589.1 | 3.19E-106 | PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] |
| Swissprot | tr|Q9ZPW7|ZHD6_ARATH | 2.00E-65 | Zinc-finger homeodomain protein 6 |
| trEMBL | tr|C6TDZ3|C6TDZ3_SOYBN | 2.00E-106 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU20045.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01333 | 3552 | 4550 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | zf-HD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001333s00028397.1 | PF04770.7 | ZF-HD_dimer | 111 | 167 | 1.60E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.073 |
| SRR1783600 | control | 0.064 |
| SRR1783602 | moderate drought stress | 0.711 |
| SRR1811619 | moderate drought stress | 0.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.169 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.453 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.691 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.155 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.706 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.487 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.121 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.287 |
| SRR2967015 | Control (Tissue:root) | 0.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.119 |
| SRR9715740 | Leave | 10.265 |
| SRR9715741 | Leave | 8.357 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.434 |
| SRR9715743 | Root | 0.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.247 |
| SRR8400027 | Control-Root | 1.873 |