Gene detail

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Gene detail information of Glyur001333s00028402.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13930.1	5.00E-169	Chalcone and stilbene synthase family protein
NR	AFD36435.1	0	chalcone synthase 1 [Astragalus membranaceus]
COG	YP_004445699.1	2.00E-37	Naringenin-chalcone synthase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|O23884\|CHS5_PEA	0	Chalcone synthase 5
trEMBL	tr\|H9BQA1\|H9BQA1_ASTME	0	Chalcone synthase 1 {ECO:0000313\|EMBL:AFD36435.1}

Sequence

Transcript Sequence

>Glyur001333s00028402.1
CTACAACTTGTTGCTGATATTTGGGTTCAAATGGCAATACTTTGCTATATACCCATATATCATTGATTAGGAACTTCATTTCAAAGAAATAGAAAAAATGGCGAGTGCAGNTGAAATTCATAAGGCTCAAAGGGCAGAAGGCCCTGCAACCATCTTGGCCATTGGCACTGCCAATCCACCAAATTATATTGAACAACGTACCTATCCTGATTACTATTTCAGAATCACAAATAGCGAGCACATGACCGAACTTAAAGAGAAATTTCAACGCATGTGTGATAAATCTATGATTAAAAAGCGACATATGTACTTAACAGAAGATATTTTGAAAGACAATCCTAACATTTGCACTTATGCTGCATCTTCTTTGGATTCTAAGCAAGATATGGTGGTTNTAGAGGTACCTAAACTAGGGAAGGAGGCTGCAATCAAGGCAATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACCCATTTAATCTTTTGCACTACAACTGGTGTTGANATGCCTGGTGCTGATTACCAACTTACTAAACTCTTAGATCTTTGCCCATATGTGAAAAGGTACATGATGTACCAACAAGGGTGTGGTGCAGGTGGAACAGTGCTCCGTTTGGCCAAAGACTTGGCTGAAAACAACAAAGGTGCTCGTGTGTTAGTTGTTTGTTGTGAGATCATTGCAATGCTATTTCGTGGCCCTAGTGAAACNCACCTAGATAGCCTTTTGGCACAAGCATTGTTTGGAGATGGAGCAGTTGCNATTATTGTTGGGTCTGATCCAATACTAGAAATTGAAAAACCTTTGTTTGAGCTAGTTTGGACAGCACAAATAATTATTCCAAATAGTGAAGGAGTTGTTAAACTTCACCTTCGTGAAGTTGGGCTATCAATTCATCTCCAGAGACATCTTCCTGAACTTGTCTCAAGTAACATTGATGAAGCACTCATTAAGGCCTTTCAACCTTTAGGCATCTCTGATTATAATTCAATCTTTTGGGTTGTACATCCAGGTGGACCTGCAATTCTAAATCAAATTGAGCAAAAGTTGGGTTTGAAGCCTGAAAAAATGAGAGCTAGTAGAGAAGTGCTTACTGAATATGGCAATATGCTAAGTGTAGGTGTCCTGTTTGCCTTGGATGAGATGCGAAGGAAATCAACTCGAGATGGACTTAAAACTACAGGTGAAGGGCTTGAATGGGGTGTGTTACTTAGTGTTGGCCCTGAACTTGCCCTTGAAACCATTGTTCTACATAGTGTGGCTATATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01333	19749	21136	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00660	CHS	EC:2.3.1.74	Flavonoid biosynthesis	map00941
K00660	CHS	EC:2.3.1.74	Circadian rhythm - plant	map04712

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009058 biosynthetic process

molecular_function GO:0003824 catalytic activity GO:0016746 transferase activity, transferring acyl groups GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001333s00028402.1	PF00195.14	Chal_sti_synt_N	4	228	1.40E-118
Glyur001333s00028402.1	PF02797.10	Chal_sti_synt_C	238	387	7.50E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.996

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.101
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.062
SRR9715740	Leave	1.044
SRR9715741	Leave	2.351
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.001

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.029
SRR8400027	Control-Root	0.065