Gene detail information of Glyur001335s00047043.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38110.1 | 0 | glycerol-3-phosphate acyltransferase 6 |
| NR | KEH28858.1 | 0 | glycerol-3-phosphate acyltransferase [Medicago truncatula] |
| Swissprot | tr|O80437|GPAT6_ARATH | 0 | Glycerol-3-phosphate 2-O-acyltransferase 6 |
| trEMBL | tr|A0A072UIH6|A0A072UIH6_MEDTR | 0 | Glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:KEH28858.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01335 | 25505 | 29576 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13508 | GPAT | EC:2.3.1.15 | Glycerolipid metabolism | map00561 |
| Glycerophospholipid metabolism | map00564 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001335s00047043.1 | PF12710.2 | HAD | 24 | 203 | 1.10E-08 |
| Glyur001335s00047043.1 | PF01553.16 | Acyltransferase | 296 | 399 | 3.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.195 |
| SRR1783600 | control | 1.242 |
| SRR1783602 | moderate drought stress | 0.451 |
| SRR1811619 | moderate drought stress | 0.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.073 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.006 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.669 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.195 |
| SRR2967015 | Control (Tissue:root) | 0.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.359 |
| SRR9715740 | Leave | 0.187 |
| SRR9715741 | Leave | 1.491 |
| SRR9715739 | Root | 2.225 |
| SRR9715742 | Root | 0.761 |
| SRR9715743 | Root | 0.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.903 |
| SRR8400027 | Control-Root | 5.594 |