Gene detail information of Glyur001337s00036086.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G28345.10ABC transporter family protein
NRXP_004492229.10PREDICTED: ABC transporter B family member 15-like [Cicer arietinum]
COGYP_005367043.16.00E-109efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprottr|Q9LHD1|AB15B_ARATH0ABC transporter B family member 15
trEMBLtr|G7KWX5|G7KWX5_MEDTR0ABC transporter B family protein {ECO:0000313|EMBL:AES78925.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01337332613864-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001337s00036086.1PF00664.18ABC_membrane393024.60E-34
Glyur001337s00036086.1PF00005.22ABC_tran3785274.00E-32
Glyur001337s00036086.1PF00664.18ABC_membrane6859533.40E-45
Glyur001337s00036086.1PF00005.22ABC_tran102511761.60E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.435
SRR1783600control0.385
SRR1783602moderate drought stress2.525
SRR1811619moderate drought stress2.260

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.228
DRR006520Root Summer glycyrrhizin high producing strain3.394
DRR006521Root Winter glycyrrhizin high producing strain0.059
DRR006522Root Winter glycyrrhizin high producing strain0.072
DRR006523Root Summer glycyrrhizin low producing strain3.419
DRR006524Root Summer glycyrrhizin low producing strain3.190
DRR006525Leaf Summer glycyrrhizin high producing strain4.670
DRR006526Leaf Summer glycyrrhizin high producing strain4.807

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.661
SRR2868004Drought Stress(Tissue:root)0.817
SRR2967015Control (Tissue:root)1.354

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.010
SRR9715740Leave2.100
SRR9715741Leave2.549
SRR9715739Root0.347
SRR9715742Root4.277
SRR9715743Root3.514

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.038
SRR8749028MeJA induced 9h0.036
SRR8749029MeJA induced 9h0.105
SRR8749030Uninduced0.082
SRR8749031Uninduced0.018
SRR8749032Uninduced0.034

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.653
SRR8400027Control-Root2.921

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved