Gene detail information of Glyur001337s00036092.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25430.1 | 2.00E-176 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | XP_004492235.1 | 0 | PREDICTED: poly(A)-specific ribonuclease PARN-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q8W4C3|PARNL_ARATH | 0 | Poly(A)-specific ribonuclease PARN-like |
| trEMBL | tr|V7B8B7|V7B8B7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW12701.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01337 | 60973 | 65500 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01148 | PARN | EC:3.1.13.4 | RNA degradation | map03018 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001337s00036092.1 | PF04857.15 | CAF1 | 30 | 589 | 1.50E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.884 |
| SRR1783600 | control | 4.924 |
| SRR1783602 | moderate drought stress | 6.960 |
| SRR1811619 | moderate drought stress | 6.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.478 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.319 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.332 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.016 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.999 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.803 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.466 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.912 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.653 |
| SRR2967015 | Control (Tissue:root) | 7.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.792 |
| SRR9715740 | Leave | 6.543 |
| SRR9715741 | Leave | 6.383 |
| SRR9715739 | Root | 1.731 |
| SRR9715742 | Root | 4.705 |
| SRR9715743 | Root | 4.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.393 |
| SRR8749028 | MeJA induced 9h | 8.233 |
| SRR8749029 | MeJA induced 9h | 5.829 |
| SRR8749030 | Uninduced | 5.787 |
| SRR8749031 | Uninduced | 2.834 |
| SRR8749032 | Uninduced | 2.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.165 |
| SRR8400027 | Control-Root | 7.425 |