Gene detail

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Gene detail information of Glyur001339s00035230.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47070.1	4.00E-32	squamosa promoter binding protein-like 1
NR	XP_004510032.1	1.49E-70	PREDICTED: squamosa promoter-binding-like protein 13-like [Cicer arietinum]
Swissprot	tr\|Q38741\|SBP1_ANTMA	8.00E-41	Squamosa promoter-binding protein 1
trEMBL	tr\|A0A072TRQ4\|A0A072TRQ4_MEDTR	6.00E-71	Squamosa promoter-binding-like protein {ECO:0000313\|EMBL:KEH19523.1}

Sequence

Transcript Sequence

>Glyur001339s00035230.1
CCCCATCTACAATACCCTCTCCTCTATGCACTATTCCCATACCTTATATACTAATAAAAGCACACACAACTAACAAAATAAAGCATGTGGTCCACACACCCCTTGCACCTTCTTTTATGCCTTTTCTACTTCATATAAACTCCCCCTCTTTCACTTGAATGCTCCCAAAAGTCTAGCTTCTACAACTTCACTTGCTCNTTCATTATAGTCCTCATTCATCATTGCCACCAATCCATCACCAACTCTTTGTGAACAGCTCTCACAATGGAGGCAAGGGGCATTGAGAGGAAGAGAACACTNATGATGGAAAAGGTGAGAAAGAATTGCACAATTGAAGAGGAAGTGGAAAATGAAGCAGAAGAGGAGGATGAAAGCGGCGGTGGTGGAGGCNGTTTCACAGAAGAAGAGAAGAAGAAAGGGGTTGGTGGTGGTGGGAGAAGAGGAGGATCAAGTGGTGGTGGTGGCAGTGGTGGAGGGGTTTCTCCACCTTCCTGTCAAGCAGAGAGGTGTGGAGCTGATTTGACTGANGCAAAGCGATACCATCGCCGCCATAAGGTGTGTGAGTTTCACTCCAAGGCGCCTGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGACCTGGCGGAGTTCGATGAAGCGAAGAGAAGCTGCCGCAGGCGCTTGGCCGGACACAATGAGCGGCGAAGGAAAAGCAACCCAGAAGCTGCTGCAGCACATGAGGGTTGCAGCAGCCACAGCAAAGGCCATCATCATCATCACCCTAAGGAACAAACAACACAGTGCAGACTTGCTGATGAGAGGGGAAGAATTCAGNTGAACGTACCACCTGGGAGTTCTTCTGGCTACAAGTCTTTCAATATCAGGTGAAAGGCAAAATGTTCAGTCTCAGCTCCCTCTCTTCTGTCACCCTCTATGGTTTCTTACAAGCCAAGGCATAGAATAATGACCACCCCTTTGGTATGTTCCCATTTCCCCCAGAACAAGAACCTAATTACACACGAAAACTTCCAACATCCAAAGGTGGTGTGTCTTATGCAATGTAAGCTATAGTTTCCTTGGAGCTCTTTTTTCACTTATTTAATATGGGTGCCTTTTTTTTTTTTTCTTTTGATTGAATAATATGGGTGCCTTTTGTTTCTGTTTGCCTTTCCATATTGAATGTTTGTACCCCGTATCTTCGACTGGATTATATAATAAAAAGATATTTGCTTCTTTTGGATTAATTCACTTATCT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01339	20746	22315	-

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001339s00035230.1	PF03110.9	SBP	77	153	3.60E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.174
SRR1783600	control	0.174
SRR1783602	moderate drought stress	1.652
SRR1811619	moderate drought stress	1.708

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.430
DRR006520	Root Summer glycyrrhizin high producing strain	0.761
DRR006521	Root Winter glycyrrhizin high producing strain	0.175
DRR006522	Root Winter glycyrrhizin high producing strain	0.172
DRR006523	Root Summer glycyrrhizin low producing strain	2.416
DRR006524	Root Summer glycyrrhizin low producing strain	2.820
DRR006525	Leaf Summer glycyrrhizin high producing strain	129.565
DRR006526	Leaf Summer glycyrrhizin high producing strain	128.459

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.081
SRR2868004	Drought Stress(Tissue:root)	0.020
SRR2967015	Control (Tissue:root)	0.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	22.617
SRR9715740	Leave	91.424
SRR9715741	Leave	47.604
SRR9715739	Root	0.000
SRR9715742	Root	1.291
SRR9715743	Root	0.987

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.029
SRR8749028	MeJA induced 9h	0.073
SRR8749029	MeJA induced 9h	0.341
SRR8749030	Uninduced	0.022
SRR8749031	Uninduced	0.082
SRR8749032	Uninduced	0.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.013
SRR8400027	Control-Root	0.012