Gene detail information of Glyur001348s00036180.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67190.2 | 1.00E-150 | F-box/RNI-like superfamily protein |
| NR | XP_004494029.1 | 0 | PREDICTED: F-box/LRR-repeat protein At1g67190-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9ZW88|FBL34_ARATH | 0 | F-box/LRR-repeat protein At1g67190 |
| trEMBL | tr|V7CXI0|V7CXI0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW34887.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01348 | 33985 | 36500 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001348s00036180.1 | PF12937.2 | F-box-like | 2 | 35 | 2.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.639 |
| SRR1783600 | control | 3.623 |
| SRR1783602 | moderate drought stress | 4.593 |
| SRR1811619 | moderate drought stress | 4.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.112 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.186 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.840 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.869 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.380 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.574 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.743 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.518 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.869 |
| SRR2967015 | Control (Tissue:root) | 6.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.371 |
| SRR9715740 | Leave | 2.675 |
| SRR9715741 | Leave | 2.934 |
| SRR9715739 | Root | 2.779 |
| SRR9715742 | Root | 1.726 |
| SRR9715743 | Root | 2.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.799 |
| SRR8749028 | MeJA induced 9h | 4.571 |
| SRR8749029 | MeJA induced 9h | 1.711 |
| SRR8749030 | Uninduced | 2.719 |
| SRR8749031 | Uninduced | 3.836 |
| SRR8749032 | Uninduced | 1.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.622 |
| SRR8400027 | Control-Root | 5.564 |