Gene detail information of Glyur001349s00028245.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25220.1 | 6.00E-141 | KNOTTED1-like homeobox gene 3 |
| NR | XP_007136985.1 | 0 | hypothetical protein PHAVU_009G090500g [Phaseolus vulgaris] |
| Swissprot | tr|O04136|KNAP3_MALDO | 0 | Homeobox protein knotted-1-like 3 |
| trEMBL | tr|V7ATS5|V7ATS5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW08979.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01349 | 8334 | 13240 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001349s00028245.1 | PF03790.8 | KNOX1 | 175 | 217 | 6.60E-18 |
| Glyur001349s00028245.1 | PF03791.8 | KNOX2 | 231 | 284 | 7.60E-23 |
| Glyur001349s00028245.1 | PF03789.8 | ELK | 341 | 362 | 7.30E-07 |
| Glyur001349s00028245.1 | PF05920.6 | Homeobox_KN | 381 | 420 | 3.20E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.904 |
| SRR1783600 | control | 28.519 |
| SRR1783602 | moderate drought stress | 29.358 |
| SRR1811619 | moderate drought stress | 29.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.536 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.089 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.277 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.491 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 68.769 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 68.881 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.133 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.178 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.469 |
| SRR2967015 | Control (Tissue:root) | 29.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 41.875 |
| SRR9715740 | Leave | 37.480 |
| SRR9715741 | Leave | 46.048 |
| SRR9715739 | Root | 11.095 |
| SRR9715742 | Root | 45.362 |
| SRR9715743 | Root | 38.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.061 |
| SRR8749028 | MeJA induced 9h | 3.387 |
| SRR8749029 | MeJA induced 9h | 1.290 |
| SRR8749030 | Uninduced | 1.141 |
| SRR8749031 | Uninduced | 0.182 |
| SRR8749032 | Uninduced | 0.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.153 |
| SRR8400027 | Control-Root | 27.426 |