Gene detail

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Gene detail information of Glyur001351s00036011.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	4.00E-133	S-locus lectin protein kinase family protein
NR	XP_006582205.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like isoform X2 [Glycine max]
COG	YP_001958461.1	1.00E-15	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|O81832\|Y4729_ARATH	1.00E-157	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|K7KXD7\|K7KXD7_SOYBN	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur001351s00036011.1
TTGATCAAAATATCAACGGTACCAAGACACCGGCGGCTGTAACTTCTGAAATGTCAACTTTGTCTGGTCTCTGAAATTGTTCAAGAGAAGTTTGTCATAATTAAATGGTTACAAGCGTCAACTCTTTCACACCCGAACGAACCAACAAGCATCCTAATATCTTCCCATCCTACTTTACCATCATCCTCTTCCCCTCCATAATTAAAAAACACAAGCCACACCAAAACTCAAGCAAAGTTGCTTACAATAAAAACAAAATAAAAAAAATGCTTGACAGCATCGTAGTGTTAATTCTTTTGTTCTTTTCACTCTCCCACACAAGAACAACAAGAAGCACTTCACTGGATAGTTTATCTATGAATCAATCCATCCGAGATGGCCAGAGTTTAGTTTCGGCACGTGGAACCTTCGAATTGGGTTTCTTCAGCCCCGGAAACTCAACGGGTCGATATTTGGGTATGTGGTACAGAAACTTAACCCCCTTAACGGTGGTGTGGGTAGCCAACAGGGAAACACCACTCCGTAACAATTCAGGAGTCTTGAAACTCAACGAGAACGGGGTTCTCGTGATTCTCAACGGCAACACAACAATAACGACACCGTTTGGTTGTCGTCCAACAAAGCAGTGAAGAATAGTTCCACAATTGCACAGCTCTTAGACACCGGAAACTTGTGCTGAAAGTTGGACATGATGCTAAAGATGGAGATTTCTTGTGGCAGAGTTTTGATTACCCATGCGATACACTGTTGCCAGGGATGAAGTTGGGTTGGGATTTGGTAACTGGTTTGAACAGGTTTGAGTCATCTTGGAAGAGTTTTGATGATCCAGCTAAGGGGGACTATTCTGTAAACATTGACATTAGAGGATATCCCCAATTAGTTATTATGAAAGGTTCTGCTATAAGAATTAGAATAGGGGCATGGAATGGGCGTGGTTTCACTGGGTACCCATCACAACCATTGAAACAAAAACAGAGGTATAATTTTGTCGTGAATGATAGAGAAGTGTATCATCAATATACAGTCACTGATAGCTCCGTTGTTTCGATATACAAACTTTCTCCTTCTGGAAACTTGGGGGCTTTGGCTTGGACGAGTCCGAAAAGCGGTAGGATAGTTATCAACACCGGGGGAGAAGATTCGTGTGATGATTACGCAATGTGTGGTGCGAATTCCATTTGCAGAATGAATGGTAACGTTCCGAACTGTGAGTGCCTGAAAGGGTATGTTCCTAAGTTCCCTGAACAATGGAACATATCGTACTGGTCTAGCGGTTGTGCTCCAAGGAATGGATATGTTTGTGGGAAAAATAACACTGGTGGGTTCTTGAGGTACAAAGAAATGAAATTGCCAGACACGGCTTCGTCATGGTATAATAAGACCATGAGCCTTGCGGAATGTGAAAGGGAATGTATGGAGAACTGTTCGTGTACGGCATATACGAATTTGGATATCCGTGGTGGAGGAAGTGGGTGTCTACTTTGGTCTGGTGATCTTGTTGACATGAGGAAATTCTCTCAATGGGGACAAGAGCTTTATATCAGAGTCCCTTCTTCAGAACTAGTATATGATCTTGCAGCATTTCAACGGCAGCAAGAATATTTTAGATTGAGGAAGGAAGACACAGATCTGCCACTATTTGATTTGTCAATGATTGTTAAAGCCACTAATAATTTTTCTAGCAGAAATAAACTTGGGGAAGGTGGATTTGGACCAGTGTACAAGGTAGCCATAAAACGGCACTCAAAGAAGTCTAATCAAGGATGGGAGGAGCTTAAAAACGAAGTCATGTTGATTGCGAAACTTCAGCATCGTAATCTTGTGAAGCTTCTTGGTTGCTGCATTCAAGGAGAGGAAAAATTGTTGATCTATGAATACATGCTCAACAAGAGTTTAGACAACTTCATTTTTGCCTGGCGTCAACGTTTCCACATTATTGGCGGCATTGCTCGGGGGCTTCTCTATCTTCACCAAGACTCTACACTCAGAGTTATTCACAGAGATTTGAAAACCAGCAACATCCTACTAGATGCCCACATGAATCCAAAAATCTCAGACTTCGGCCTTGCGCGGACTTTTGGGGGAGATCAAGTTGAAGCCAAAACAAGAAGAATGGTTGGAACATACTTACAACCCAGAGAGGGGTTGAAAGTAGGGTACGGTTGGGCTACAATTGTCTACTGGAATTATCCAGGTTTCGAAAGTCTCAATGGCCATGTGGTGGATCCCAGCGAGGCGAGATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01351	7779	16605	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001351s00036011.1	PF00954.15	S_locus_glycop	52	160	2.40E-23
Glyur001351s00036011.1	PF08276.6	PAN_2	182	250	1.30E-22
Glyur001351s00036011.1	PF00069.20	Pkinase	310	457	4.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.531
SRR1783600	control	2.626
SRR1783602	moderate drought stress	3.616
SRR1811619	moderate drought stress	3.540

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.500
DRR006520	Root Summer glycyrrhizin high producing strain	3.310
DRR006521	Root Winter glycyrrhizin high producing strain	4.880
DRR006522	Root Winter glycyrrhizin high producing strain	4.712
DRR006523	Root Summer glycyrrhizin low producing strain	3.550
DRR006524	Root Summer glycyrrhizin low producing strain	3.662
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.256
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.254

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.536
SRR2868004	Drought Stress(Tissue:root)	8.811
SRR2967015	Control (Tissue:root)	10.390

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.196
SRR9715740	Leave	3.541
SRR9715741	Leave	15.118
SRR9715739	Root	0.000
SRR9715742	Root	3.407
SRR9715743	Root	3.088

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.610
SRR8749028	MeJA induced 9h	6.684
SRR8749029	MeJA induced 9h	1.654
SRR8749030	Uninduced	14.006
SRR8749031	Uninduced	8.732
SRR8749032	Uninduced	3.736

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.158
SRR8400027	Control-Root	4.377