Gene detail information of Glyur001353s00032366.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07120.1 | 2.00E-45 | RING/U-box superfamily protein |
| NR | XP_004513525.1 | 8.52E-144 | PREDICTED: uncharacterized protein LOC101512916 [Cicer arietinum] |
| Swissprot | tr|Q8LA32|LUL4_ARATH | 1.00E-06 | Probable E3 ubiquitin-protein ligase LUL4 |
| trEMBL | tr|K7MSP9|K7MSP9_SOYBN | 4.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G35410.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01353 | 41441 | 44412 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001353s00032366.1 | PF13920.1 | zf-C3HC4_3 | 304 | 347 | 3.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.874 |
| SRR1783600 | control | 5.449 |
| SRR1783602 | moderate drought stress | 5.997 |
| SRR1811619 | moderate drought stress | 5.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.581 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.616 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.396 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.501 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.017 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.195 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.039 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.099 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.442 |
| SRR2967015 | Control (Tissue:root) | 1.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.402 |
| SRR9715740 | Leave | 7.618 |
| SRR9715741 | Leave | 7.791 |
| SRR9715739 | Root | 4.756 |
| SRR9715742 | Root | 2.585 |
| SRR9715743 | Root | 2.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.082 |
| SRR8749028 | MeJA induced 9h | 0.771 |
| SRR8749029 | MeJA induced 9h | 1.381 |
| SRR8749030 | Uninduced | 1.038 |
| SRR8749031 | Uninduced | 0.455 |
| SRR8749032 | Uninduced | 1.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.475 |
| SRR8400027 | Control-Root | 13.945 |