Gene detail information of Glyur001356s00040392.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05940.1 | 4.00E-126 | Protein kinase superfamily protein |
| NR | XP_003547504.1 | 0 | PREDICTED: serine/threonine-protein kinase At5g01020-like [Glycine max] |
| COG | YP_284821.1 | 2.00E-20 | protein kinase:GAF [Dechloromonas aromatica RCB] |
| Swissprot | tr|Q8GXZ3|Y5102_ARATH | 3.00E-130 | Serine/threonine-protein kinase At5g01020 |
| trEMBL | tr|I1MHG2|I1MHG2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G19600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01356 | 43044 | 44905 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.2.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001356s00040392.1 | PF00069.20 | Pkinase | 5 | 230 | 4.20E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.191 |
| SRR1783600 | control | 5.116 |
| SRR1783602 | moderate drought stress | 9.752 |
| SRR1811619 | moderate drought stress | 9.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.399 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.559 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.037 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.985 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.978 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.416 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.693 |
| SRR2868004 | Drought Stress(Tissue:root) | 42.389 |
| SRR2967015 | Control (Tissue:root) | 42.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.495 |
| SRR9715740 | Leave | 19.853 |
| SRR9715741 | Leave | 46.454 |
| SRR9715739 | Root | 4.916 |
| SRR9715742 | Root | 30.864 |
| SRR9715743 | Root | 25.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 196.922 |
| SRR8749028 | MeJA induced 9h | 400.246 |
| SRR8749029 | MeJA induced 9h | 679.698 |
| SRR8749030 | Uninduced | 96.806 |
| SRR8749031 | Uninduced | 428.194 |
| SRR8749032 | Uninduced | 362.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.377 |
| SRR8400027 | Control-Root | 21.262 |