Gene detail information of Glyur001358s00036857.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G15580.12.00E-30RING/U-box superfamily protein
NRKEH38087.11.11E-96zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]
Swissprottr|Q8GYT9|SIS3_ARATH2.00E-10E3 ubiquitin-protein ligase SIS3 (Precursor)
trEMBLtr|A0A072V8C4|A0A072V8C4_MEDTR4.00E-97Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH38087.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013587100072539-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001358s00036857.1PF13639.1zf-RING_21491917.70E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control141.012
SRR1783600control142.554
SRR1783602moderate drought stress70.162
SRR1811619moderate drought stress69.853

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain163.067
DRR006520Root Summer glycyrrhizin high producing strain162.731
DRR006521Root Winter glycyrrhizin high producing strain25.690
DRR006522Root Winter glycyrrhizin high producing strain25.473
DRR006523Root Summer glycyrrhizin low producing strain131.114
DRR006524Root Summer glycyrrhizin low producing strain132.825
DRR006525Leaf Summer glycyrrhizin high producing strain55.905
DRR006526Leaf Summer glycyrrhizin high producing strain55.769

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)45.087
SRR2868004Drought Stress(Tissue:root)45.743
SRR2967015Control (Tissue:root)47.196

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave79.333
SRR9715740Leave71.742
SRR9715741Leave61.519
SRR9715739Root9.093
SRR9715742Root32.189
SRR9715743Root28.671

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.078
SRR8749028MeJA induced 9h14.839
SRR8749029MeJA induced 9h34.979
SRR8749030Uninduced25.529
SRR8749031Uninduced16.101
SRR8749032Uninduced6.100

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root61.435
SRR8400027Control-Root72.070

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved