Gene detail information of Glyur001359s00026918.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24360.1 | 2.00E-58 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003551837.1 | 2.96E-146 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic [Glycine max] |
| COG | YP_007166826.1 | 5.00E-69 | 3-oxoacyl-(acyl-carrier-protein) reductase [Halothece sp. PCC 7418] |
| Swissprot | tr|P28643|FABG_CUPLA | 9.00E-109 | 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic (Precursor) |
| trEMBL | tr|I1LNB1|I1LNB1_SOYBN | 1.00E-145 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G37320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01359 | 54759 | 59192 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00059 | fabG | EC:1.1.1.100 | Fatty acid metabolism | map01212 |
| Fatty acid biosynthesis | map00061 | |||
| Biosynthesis of unsaturated fatty acids | map01040 | |||
| Biotin metabolism | map00780 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001359s00026918.1 | PF00106.20 | adh_short | 80 | 120 | 1.50E-06 |
| Glyur001359s00026918.1 | PF13561.1 | adh_short_C2 | 160 | 254 | 4.40E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 79.888 |
| SRR1783600 | control | 79.829 |
| SRR1783602 | moderate drought stress | 54.706 |
| SRR1811619 | moderate drought stress | 53.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.485 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.571 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.377 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.508 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.190 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.690 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 44.052 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 114.709 |
| SRR2868004 | Drought Stress(Tissue:root) | 64.975 |
| SRR2967015 | Control (Tissue:root) | 63.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 43.778 |
| SRR9715740 | Leave | 45.670 |
| SRR9715741 | Leave | 47.977 |
| SRR9715739 | Root | 40.822 |
| SRR9715742 | Root | 45.606 |
| SRR9715743 | Root | 43.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 70.826 |
| SRR8749028 | MeJA induced 9h | 51.226 |
| SRR8749029 | MeJA induced 9h | 42.582 |
| SRR8749030 | Uninduced | 9.656 |
| SRR8749031 | Uninduced | 4.125 |
| SRR8749032 | Uninduced | 6.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 150.178 |
| SRR8400027 | Control-Root | 149.934 |