Gene detail information of Glyur001361s00032682.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57050.1 | 1.00E-81 | Protein phosphatase 2C family protein |
| NR | XP_004513451.1 | 0 | PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] |
| Swissprot | tr|Q0JLP9|P2C06_ORYSJ | 8.00E-108 | Probable protein phosphatase 2C 6 |
| trEMBL | tr|A0A072VH76|A0A072VH76_MEDTR | 0 | Protein phosphatase 2C ABI2-like protein {ECO:0000313|EMBL:KEH37500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01361 | 20044 | 23906 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14497 | PP2C | EC:3.1.3.16 | MAPK signaling pathway - plant | map04016 |
| Plant hormone signal transduction | map04075 | |||
| Insulin resistance | map04931 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001361s00032682.1 | PF00481.16 | PP2C | 213 | 357 | 6.70E-10 |
| Glyur001361s00032682.1 | PF00481.16 | PP2C | 358 | 496 | 3.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.560 |
| SRR1783600 | control | 4.640 |
| SRR1783602 | moderate drought stress | 11.736 |
| SRR1811619 | moderate drought stress | 11.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.538 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.912 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.107 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.268 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 78.412 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 78.728 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.728 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.693 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.590 |
| SRR2967015 | Control (Tissue:root) | 37.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.211 |
| SRR9715740 | Leave | 30.083 |
| SRR9715741 | Leave | 16.697 |
| SRR9715739 | Root | 0.764 |
| SRR9715742 | Root | 7.079 |
| SRR9715743 | Root | 6.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.381 |
| SRR8749028 | MeJA induced 9h | 8.300 |
| SRR8749029 | MeJA induced 9h | 2.089 |
| SRR8749030 | Uninduced | 7.988 |
| SRR8749031 | Uninduced | 8.611 |
| SRR8749032 | Uninduced | 5.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.605 |
| SRR8400027 | Control-Root | 14.181 |