Gene detail information of Glyur001369s00030289.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G23820.10UDP-D-glucuronate 4-epimerase 6
NRXP_004502237.10PREDICTED: UDP-glucuronate 4-epimerase 6-like [Cicer arietinum]
COGYP_004010574.11.00E-105NAD-dependent epimerase/dehydratase [Rhodomicrobium vannielii ATCC 17100]
Swissprottr|Q9LIS3|GAE6_ARATH0UDP-glucuronate 4-epimerase 6
trEMBLtr|G7JA85|G7JA85_MEDTR0UDP-D-glucuronate 4-epimerase {ECO:0000313|EMBL:AES71913.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013692536626745-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08679E5.1.3.6 EC:5.1.3.6 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016857  racemase and epimerase activity, acting on carbohydrates and derivatives

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001369s00030289.1PF01370.16Epimerase1093497.50E-45


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control434.552
SRR1783600control437.199
SRR1783602moderate drought stress777.550
SRR1811619moderate drought stress783.954

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain360.995
DRR006520Root Summer glycyrrhizin high producing strain356.313
DRR006521Root Winter glycyrrhizin high producing strain1424.873
DRR006522Root Winter glycyrrhizin high producing strain1369.345
DRR006523Root Summer glycyrrhizin low producing strain445.303
DRR006524Root Summer glycyrrhizin low producing strain442.654
DRR006525Leaf Summer glycyrrhizin high producing strain192.776
DRR006526Leaf Summer glycyrrhizin high producing strain189.006

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)117.562
SRR2868004Drought Stress(Tissue:root)134.802
SRR2967015Control (Tissue:root)207.970

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave166.272
SRR9715740Leave66.071
SRR9715741Leave75.668
SRR9715739Root156.826
SRR9715742Root288.893
SRR9715743Root247.486

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h702.972
SRR8749028MeJA induced 9h1301.120
SRR8749029MeJA induced 9h696.962
SRR8749030Uninduced500.084
SRR8749031Uninduced146.016
SRR8749032Uninduced248.722

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root195.749
SRR8400027Control-Root238.759

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved