Gene detail information of Glyur001369s00030295.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G31970.10DNA repair-recombination protein (RAD50)
NRXP_003552170.10PREDICTED: DNA repair protein RAD50-like isoform X1 [Glycine max]
COGNP_613974.17.00E-09SMC1-family ATPase [Methanopyrus kandleri AV19]
Swissprottr|Q9SL02|RAD50_ARATH0DNA repair protein RAD50
trEMBLtr|I1MYA5|I1MYA5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G00530.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013695127163840+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10866RAD50 EC:3.6.-.- Homologous recombination map03440
Non-homologous end-joiningmap03450


Gene Ontology

biological_process

GO:0000723  telomere maintenance

GO:0006281  DNA repair


cellular_component

GO:0005634  nucleus

GO:0030870  Mre11 complex


molecular_function

GO:0016887  ATPase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001369s00030295.1PF13476.1AAA_2382563.30E-27
Glyur001369s00030295.1PF04423.9Rad50_zn_hook6897251.20E-05
Glyur001369s00030295.1PF13558.1SbcCD_C119112591.60E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.529
SRR1783600control13.662
SRR1783602moderate drought stress22.157
SRR1811619moderate drought stress22.309

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.071
DRR006520Root Summer glycyrrhizin high producing strain22.260
DRR006521Root Winter glycyrrhizin high producing strain13.636
DRR006522Root Winter glycyrrhizin high producing strain13.934
DRR006523Root Summer glycyrrhizin low producing strain21.760
DRR006524Root Summer glycyrrhizin low producing strain21.851
DRR006525Leaf Summer glycyrrhizin high producing strain15.306
DRR006526Leaf Summer glycyrrhizin high producing strain15.471

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)50.629
SRR2868004Drought Stress(Tissue:root)33.160
SRR2967015Control (Tissue:root)33.060

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.839
SRR9715740Leave19.076
SRR9715741Leave20.934
SRR9715739Root26.995
SRR9715742Root21.284
SRR9715743Root22.901

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.395
SRR8749028MeJA induced 9h29.043
SRR8749029MeJA induced 9h17.566
SRR8749030Uninduced27.816
SRR8749031Uninduced10.630
SRR8749032Uninduced14.819

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root43.016
SRR8400027Control-Root38.678

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved