Gene detail information of Glyur001369s00030297.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G13930.10serine hydroxymethyltransferase 4
NRXP_004502243.10PREDICTED: serine hydroxymethyltransferase 1-like [Cicer arietinum]
COGYP_004062716.15.00E-100serine hydroxymethyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1]
Swissprottr|O23254|GLYC4_ARATH0Serine hydroxymethyltransferase 4
trEMBLtr|G7JAR7|G7JAR7_MEDTR0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013696158465077-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00600glyA, SHMT EC:2.1.2.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0006544  glycine metabolic process

GO:0006563  L-serine metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004372  glycine hydroxymethyltransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001369s00030297.1PF00464.14SHMT132096.10E-93


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control114.503
SRR1783600control115.603
SRR1783602moderate drought stress99.883
SRR1811619moderate drought stress99.991

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain88.279
DRR006520Root Summer glycyrrhizin high producing strain88.389
DRR006521Root Winter glycyrrhizin high producing strain70.101
DRR006522Root Winter glycyrrhizin high producing strain71.193
DRR006523Root Summer glycyrrhizin low producing strain83.817
DRR006524Root Summer glycyrrhizin low producing strain85.353
DRR006525Leaf Summer glycyrrhizin high producing strain93.202
DRR006526Leaf Summer glycyrrhizin high producing strain95.230

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)204.663
SRR2868004Drought Stress(Tissue:root)110.455
SRR2967015Control (Tissue:root)115.545

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave93.251
SRR9715740Leave61.383
SRR9715741Leave83.700
SRR9715739Root154.883
SRR9715742Root131.456
SRR9715743Root136.421

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h75.311
SRR8749028MeJA induced 9h117.471
SRR8749029MeJA induced 9h42.329
SRR8749030Uninduced106.267
SRR8749031Uninduced48.255
SRR8749032Uninduced68.630

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root140.831
SRR8400027Control-Root120.897

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved