Gene detail information of Glyur001374s00029994.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58340.2 | 7.00E-19 | myb-like HTH transcriptional regulator family protein |
| NR | XP_004500362.1 | 0 | PREDICTED: uncharacterized protein LOC101503526 [Cicer arietinum] |
| Swissprot | tr|Q8W119|SMH4_MAIZE | 3.00E-10 | Single myb histone 4 |
| trEMBL | tr|V7BLL5|V7BLL5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW18874.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01374 | 24749 | 30324 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001374s00029994.1 | PF00249.26 | Myb_DNA-binding | 451 | 500 | 6.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.689 |
| SRR1783600 | control | 4.731 |
| SRR1783602 | moderate drought stress | 5.222 |
| SRR1811619 | moderate drought stress | 5.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.650 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.498 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.376 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.204 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.660 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.558 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.655 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.002 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.053 |
| SRR2967015 | Control (Tissue:root) | 9.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.138 |
| SRR9715740 | Leave | 7.603 |
| SRR9715741 | Leave | 6.842 |
| SRR9715739 | Root | 1.398 |
| SRR9715742 | Root | 3.071 |
| SRR9715743 | Root | 3.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.091 |
| SRR8749028 | MeJA induced 9h | 6.161 |
| SRR8749029 | MeJA induced 9h | 4.328 |
| SRR8749030 | Uninduced | 4.750 |
| SRR8749031 | Uninduced | 3.880 |
| SRR8749032 | Uninduced | 2.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.818 |
| SRR8400027 | Control-Root | 7.073 |