Gene detail information of Glyur001375s00028617.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63460.1 | 0 | transducin family protein / WD-40 repeat family protein |
| NR | XP_007131398.1 | 0 | hypothetical protein PHAVU_011G010400g [Phaseolus vulgaris] |
| COG | YP_007129139.1 | 2.00E-08 | WD-40 repeat-containing protein [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q8L611|SC31B_ARATH | 0 | Protein transport protein SEC31 homolog B {ECO:0000305} |
| trEMBL | tr|V7ACY7|V7ACY7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03392.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01375 | 30782 | 41536 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001375s00028617.1 | PF00400.27 | WD40 | 116 | 151 | 0.00077 |
| Glyur001375s00028617.1 | PF00400.27 | WD40 | 254 | 292 | 4.60E-06 |
| Glyur001375s00028617.1 | PF12931.2 | Sec16_C | 567 | 763 | 1.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 75.523 |
| SRR1783600 | control | 75.629 |
| SRR1783602 | moderate drought stress | 69.418 |
| SRR1811619 | moderate drought stress | 69.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 61.704 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 60.786 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 80.401 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 78.692 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 53.715 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 53.739 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.424 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 102.233 |
| SRR2868004 | Drought Stress(Tissue:root) | 88.166 |
| SRR2967015 | Control (Tissue:root) | 93.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 40.802 |
| SRR9715740 | Leave | 37.765 |
| SRR9715741 | Leave | 45.071 |
| SRR9715739 | Root | 17.948 |
| SRR9715742 | Root | 69.176 |
| SRR9715743 | Root | 58.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 111.913 |
| SRR8749028 | MeJA induced 9h | 113.454 |
| SRR8749029 | MeJA induced 9h | 86.191 |
| SRR8749030 | Uninduced | 47.155 |
| SRR8749031 | Uninduced | 57.861 |
| SRR8749032 | Uninduced | 41.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 89.099 |
| SRR8400027 | Control-Root | 91.740 |