Gene detail information of Glyur001375s00028623.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G43210.11.00E-44Excinuclease ABC, C subunit, N-terminal
NRXP_004516472.11.09E-93PREDICTED: structure-specific endonuclease subunit slx1-like [Cicer arietinum]
COGYP_391372.11.00E-09excinuclease ABC subunit C [Thiomicrospira crunogena XCL-2]
trEMBLtr|I1L5J7|I1L5J7_SOYBN6.00E-93Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G36020.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013756935171538-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15078SLX1 EC:3.6.1.- Fanconi anemia pathway map03460


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001375s00028623.1PF01541.19GIY-YIG411151.10E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.888
SRR1783600control10.880
SRR1783602moderate drought stress18.068
SRR1811619moderate drought stress17.913

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.687
DRR006520Root Summer glycyrrhizin high producing strain8.505
DRR006521Root Winter glycyrrhizin high producing strain6.380
DRR006522Root Winter glycyrrhizin high producing strain6.768
DRR006523Root Summer glycyrrhizin low producing strain7.233
DRR006524Root Summer glycyrrhizin low producing strain7.018
DRR006525Leaf Summer glycyrrhizin high producing strain6.935
DRR006526Leaf Summer glycyrrhizin high producing strain6.369

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.100
SRR2868004Drought Stress(Tissue:root)4.666
SRR2967015Control (Tissue:root)9.886

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.619
SRR9715740Leave12.199
SRR9715741Leave10.036
SRR9715739Root3.385
SRR9715742Root5.403
SRR9715743Root4.224

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.249
SRR8749028MeJA induced 9h7.838
SRR8749029MeJA induced 9h4.784
SRR8749030Uninduced8.570
SRR8749031Uninduced12.914
SRR8749032Uninduced9.674

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.850
SRR8400027Control-Root8.005

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved