Gene detail information of Glyur001376s00030055.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G17510.10ribonuclease II family protein
NRXP_004509459.10PREDICTED: exosome complex exonuclease RRP44-like [Cicer arietinum]
COGYP_004254114.15.00E-84ribonuclease R [Odoribacter splanchnicus DSM 220712]
Swissprottr|P0DM58|DI3L2_ARATH4.00E-83DIS3-like exonuclease 2 {ECO:0000255|HAMAP-Rule:MF_03045}
trEMBLtr|V7AVD4|V7AVD4_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW09622.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013764461252785+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12585DIS3, RRP44 EC:3.1.13.- RNA degradation map03018


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001376s00030055.1PF00773.14RNB2095381.50E-94


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.480
SRR1783600control27.809
SRR1783602moderate drought stress32.307
SRR1811619moderate drought stress32.264

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.084
DRR006520Root Summer glycyrrhizin high producing strain29.009
DRR006521Root Winter glycyrrhizin high producing strain22.551
DRR006522Root Winter glycyrrhizin high producing strain21.916
DRR006523Root Summer glycyrrhizin low producing strain30.840
DRR006524Root Summer glycyrrhizin low producing strain30.757
DRR006525Leaf Summer glycyrrhizin high producing strain11.922
DRR006526Leaf Summer glycyrrhizin high producing strain12.094

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.468
SRR2868004Drought Stress(Tissue:root)37.643
SRR2967015Control (Tissue:root)39.680

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.845
SRR9715740Leave23.077
SRR9715741Leave22.566
SRR9715739Root6.066
SRR9715742Root24.699
SRR9715743Root21.345

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.122
SRR8749028MeJA induced 9h32.683
SRR8749029MeJA induced 9h26.408
SRR8749030Uninduced18.665
SRR8749031Uninduced10.345
SRR8749032Uninduced12.856

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.435
SRR8400027Control-Root32.832

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved