Gene detail information of Glyur001377s00038205.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G05670.2 | 3.00E-70 | Pentatricopeptide repeat (PPR-like) superfamily protein |
NR | XP_004512317.1 | 2.16E-125 | PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like isoform X1 [Cicer arietinum] |
Swissprot | tr|Q0WVK7|PPR12_ARATH | 2.00E-97 | Pentatricopeptide repeat-containing protein At1g05670, mitochondrial (Precursor) |
trEMBL | tr|G7LAK1|G7LAK1_MEDTR | 5.00E-121 | PPR containing plant-like protein {ECO:0000313|EMBL:AET05409.2} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold01377 | 28889 | 30869 | + |
Gene family
Gene family | subfamily |
---|---|
Carbohydrate-Active enzymes Family | GT1 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur001377s00038205.1 | PF13041.1 | PPR_2 | 221 | 258 | 7.70E-09 |
Glyur001377s00038205.1 | PF13041.1 | PPR_2 | 288 | 334 | 1.50E-10 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.165 |
SRR1783600 | control | 0.157 |
SRR1783602 | moderate drought stress | 0.159 |
SRR1811619 | moderate drought stress | 0.063 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.327 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.298 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.100 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.238 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.210 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.131 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.074 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.132 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 0.306 |
SRR2868004 | Drought Stress(Tissue:root) | 0.290 |
SRR2967015 | Control (Tissue:root) | 0.297 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.015 |
SRR9715740 | Leave | 0.144 |
SRR9715741 | Leave | 0.061 |
SRR9715739 | Root | 0.004 |
SRR9715742 | Root | 0.000 |
SRR9715743 | Root | 0.146 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.057 |
SRR8749028 | MeJA induced 9h | 0.073 |
SRR8749029 | MeJA induced 9h | 0.037 |
SRR8749030 | Uninduced | 0.067 |
SRR8749031 | Uninduced | 0.000 |
SRR8749032 | Uninduced | 0.048 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.310 |
SRR8400027 | Control-Root | 0.152 |