Gene detail information of Glyur001377s00038205.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G05670.23.00E-70Pentatricopeptide repeat (PPR-like) superfamily protein
NRXP_004512317.12.16E-125PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like isoform X1 [Cicer arietinum]
Swissprottr|Q0WVK7|PPR12_ARATH2.00E-97Pentatricopeptide repeat-containing protein At1g05670, mitochondrial (Precursor)
trEMBLtr|G7LAK1|G7LAK1_MEDTR5.00E-121PPR containing plant-like protein {ECO:0000313|EMBL:AET05409.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013772888930869+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001377s00038205.1PF13041.1PPR_22212587.70E-09
Glyur001377s00038205.1PF13041.1PPR_22883341.50E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.165
SRR1783600control0.157
SRR1783602moderate drought stress0.159
SRR1811619moderate drought stress0.063

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.327
DRR006520Root Summer glycyrrhizin high producing strain0.298
DRR006521Root Winter glycyrrhizin high producing strain0.100
DRR006522Root Winter glycyrrhizin high producing strain0.238
DRR006523Root Summer glycyrrhizin low producing strain0.210
DRR006524Root Summer glycyrrhizin low producing strain0.131
DRR006525Leaf Summer glycyrrhizin high producing strain0.074
DRR006526Leaf Summer glycyrrhizin high producing strain0.132

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.306
SRR2868004Drought Stress(Tissue:root)0.290
SRR2967015Control (Tissue:root)0.297

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.015
SRR9715740Leave0.144
SRR9715741Leave0.061
SRR9715739Root0.004
SRR9715742Root0.000
SRR9715743Root0.146

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.057
SRR8749028MeJA induced 9h0.073
SRR8749029MeJA induced 9h0.037
SRR8749030Uninduced0.067
SRR8749031Uninduced0.000
SRR8749032Uninduced0.048

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.310
SRR8400027Control-Root0.152