Gene detail information of Glyur001377s00038210.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G72330.32.00E-34alanine aminotransferase 2
NRAFK36743.18.47E-48unknown [Lotus japonicus]
COGYP_001820615.15.00E-09class I and II aminotransferase [Opitutus terrae PB90-1]
Swissprottr|Q9LDV4|ALAT2_ARATH3.00E-45Alanine aminotransferase 2, mitochondrial (Precursor)
trEMBLtr|I3S901|I3S901_LOTJA3.00E-48Uncharacterized protein {ECO:0000313|EMBL:AFK36743.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013775988063317+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00814GPT, ALT EC:2.6.1.2 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Carbon fixation in photosynthetic organismsmap00710
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220


Gene Ontology

biological_process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001377s00038210.1PF00155.16Aminotran_1_21192000.00021


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.218
SRR1783600control7.360
SRR1783602moderate drought stress8.508
SRR1811619moderate drought stress9.244

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.316
DRR006520Root Summer glycyrrhizin high producing strain13.884
DRR006521Root Winter glycyrrhizin high producing strain14.423
DRR006522Root Winter glycyrrhizin high producing strain13.501
DRR006523Root Summer glycyrrhizin low producing strain23.649
DRR006524Root Summer glycyrrhizin low producing strain22.626
DRR006525Leaf Summer glycyrrhizin high producing strain8.317
DRR006526Leaf Summer glycyrrhizin high producing strain8.340

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.136
SRR2868004Drought Stress(Tissue:root)26.679
SRR2967015Control (Tissue:root)27.742

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.450
SRR9715740Leave21.239
SRR9715741Leave20.330
SRR9715739Root8.594
SRR9715742Root14.044
SRR9715743Root10.495

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.098
SRR8749028MeJA induced 9h10.785
SRR8749029MeJA induced 9h5.203
SRR8749030Uninduced5.690
SRR8749031Uninduced4.131
SRR8749032Uninduced4.476

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.459
SRR8400027Control-Root34.662

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved