Gene detail information of Glyur001384s00028579.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G42200.15.00E-36RING/U-box superfamily protein
NRXP_006581152.11.09E-67PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Glycine max]
Swissprottr|Q8L9W3|ATL23_ARATH2.00E-44E3 ubiquitin-protein ligase ATL23
trEMBLtr|I1K7G8|I1K7G8_SOYBN4.00E-68Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G02390.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013847208572474+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001384s00028579.1PF13639.1zf-RING_2711142.30E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.793
SRR1783600control25.448
SRR1783602moderate drought stress90.757
SRR1811619moderate drought stress87.034

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain55.372
DRR006520Root Summer glycyrrhizin high producing strain35.108
DRR006521Root Winter glycyrrhizin high producing strain35.148
DRR006522Root Winter glycyrrhizin high producing strain33.238
DRR006523Root Summer glycyrrhizin low producing strain67.955
DRR006524Root Summer glycyrrhizin low producing strain66.054
DRR006525Leaf Summer glycyrrhizin high producing strain12.292
DRR006526Leaf Summer glycyrrhizin high producing strain12.687

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.203
SRR2868004Drought Stress(Tissue:root)7.534
SRR2967015Control (Tissue:root)6.874

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.251
SRR9715740Leave5.236
SRR9715741Leave6.286
SRR9715739Root15.381
SRR9715742Root20.352
SRR9715743Root17.792

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.326
SRR8749028MeJA induced 9h32.805
SRR8749029MeJA induced 9h20.447
SRR8749030Uninduced15.107
SRR8749031Uninduced4.573
SRR8749032Uninduced5.349

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.545
SRR8400027Control-Root12.492

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved