Gene detail information of Glyur001387s00040335.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07930.3 | 1.00E-35 | DNA glycosylase superfamily protein |
| NR | XP_004512816.1 | 6.51E-52 | PREDICTED: uncharacterized protein LOC101490359 isoform X1 [Cicer arietinum] |
| trEMBL | tr|V7D3X8|V7D3X8_PHAVU | 4.00E-50 | Uncharacterized protein {ECO:0000313|EMBL:ESW35981.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01387 | 13072 | 21365 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10801 | MBD4 | EC:3.2.2.- | Base excision repair | map03410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001387s00040335.1 | PF00730.20 | HhH-GPD | 176 | 256 | 5.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.306 |
| SRR1783600 | control | 3.324 |
| SRR1783602 | moderate drought stress | 4.608 |
| SRR1811619 | moderate drought stress | 4.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.543 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.266 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.906 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.585 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.360 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.105 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.700 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.915 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.026 |
| SRR2967015 | Control (Tissue:root) | 7.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.984 |
| SRR9715740 | Leave | 7.762 |
| SRR9715741 | Leave | 6.264 |
| SRR9715739 | Root | 0.608 |
| SRR9715742 | Root | 2.701 |
| SRR9715743 | Root | 2.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.125 |
| SRR8749028 | MeJA induced 9h | 2.997 |
| SRR8749029 | MeJA induced 9h | 1.957 |
| SRR8749030 | Uninduced | 2.356 |
| SRR8749031 | Uninduced | 0.403 |
| SRR8749032 | Uninduced | 0.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.635 |
| SRR8400027 | Control-Root | 7.842 |