Gene detail information of Glyur001390s00030763.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G80560.17.00E-167isopropylmalate dehydrogenase 2
NRXP_004486631.10PREDICTED: 3-isopropylmalate dehydrogenase, chloroplastic-like [Cicer arietinum]
COGYP_007079545.12.00E-1593-isopropylmalate dehydrogenase [Pleurocapsa sp. PCC 7327]
Swissprottr|P29102|LEU3_BRANA03-isopropylmalate dehydrogenase, chloroplastic (Precursor)
trEMBLtr|G7IMC1|G7IMC1_MEDTR03-isopropylmalate dehydrogenase {ECO:0000256|RuleBase:RU004445}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013901608321050+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00052leuB EC:1.1.1.85 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
C5-Branched dibasic acid metabolismmap00660
Valine, leucine and isoleucine biosynthesismap00290


Gene Ontology

biological_process

GO:0009098  leucine biosynthetic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000287  magnesium ion binding

GO:0003862  3-isopropylmalate dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001390s00030763.2PF00180.15Iso_dh46942.00E-07
Glyur001390s00030763.2PF00180.15Iso_dh1033739.00E-109


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control71.053
SRR1783600control70.992
SRR1783602moderate drought stress72.822
SRR1811619moderate drought stress71.673

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain54.450
DRR006520Root Summer glycyrrhizin high producing strain53.542
DRR006521Root Winter glycyrrhizin high producing strain12.046
DRR006522Root Winter glycyrrhizin high producing strain11.723
DRR006523Root Summer glycyrrhizin low producing strain61.409
DRR006524Root Summer glycyrrhizin low producing strain60.654
DRR006525Leaf Summer glycyrrhizin high producing strain37.468
DRR006526Leaf Summer glycyrrhizin high producing strain36.440

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)84.308
SRR2868004Drought Stress(Tissue:root)58.319
SRR2967015Control (Tissue:root)64.714

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave35.971
SRR9715740Leave37.215
SRR9715741Leave38.979
SRR9715739Root36.514
SRR9715742Root44.524
SRR9715743Root43.787

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h160.277
SRR8749028MeJA induced 9h73.646
SRR8749029MeJA induced 9h107.409
SRR8749030Uninduced32.607
SRR8749031Uninduced18.462
SRR8749032Uninduced43.447

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root59.264
SRR8400027Control-Root57.508

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved