Gene detail information of Glyur001390s00030765.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26000.27.00E-151zinc finger (C3HC4-type RING finger) family protein
NRXP_007150797.10hypothetical protein PHAVU_005G181500g [Phaseolus vulgaris]
trEMBLtr|V7C1L9|V7C1L9_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW22791.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013902199326431+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10632BRAP EC:2.3.2.27 Ras signaling pathway map04014


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001390s00030765.3PF13639.1zf-RING_21541851.90E-07
Glyur001390s00030765.3PF02148.14zf-UBP1962554.20E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.072
SRR1783600control5.984
SRR1783602moderate drought stress10.285
SRR1811619moderate drought stress10.378

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.914
DRR006520Root Summer glycyrrhizin high producing strain10.960
DRR006521Root Winter glycyrrhizin high producing strain22.573
DRR006522Root Winter glycyrrhizin high producing strain21.781
DRR006523Root Summer glycyrrhizin low producing strain12.790
DRR006524Root Summer glycyrrhizin low producing strain12.755
DRR006525Leaf Summer glycyrrhizin high producing strain6.471
DRR006526Leaf Summer glycyrrhizin high producing strain6.383

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.415
SRR2868004Drought Stress(Tissue:root)18.553
SRR2967015Control (Tissue:root)18.729

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.654
SRR9715740Leave10.613
SRR9715741Leave11.258
SRR9715739Root1.040
SRR9715742Root4.399
SRR9715743Root3.821

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.539
SRR8749028MeJA induced 9h22.971
SRR8749029MeJA induced 9h29.891
SRR8749030Uninduced20.299
SRR8749031Uninduced23.034
SRR8749032Uninduced24.497

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.108
SRR8400027Control-Root12.079

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved