Gene detail

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Gene detail information of Glyur001392s00030475.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22590.1	3.00E-76	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_004502616.1	0	PREDICTED: probable trehalose-phosphate phosphatase 2-like isoform X1 [Cicer arietinum]
COG	YP_003269585.1	5.00E-51	trehalose-phosphatase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9FWQ2\|TPP2_ORYSJ	3.00E-95	Probable trehalose-phosphate phosphatase 2
trEMBL	tr\|K7KLZ2\|K7KLZ2_SOYBN	0	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}

Sequence

Transcript Sequence

>Glyur001392s00030475.1
ATGGCAGAAGCTGAAAGGAATCACCGACGGAGATTCCAATTAAATATGAAATATATGTTTCTTCTCTTTGTCACTTTCAAGATTATAAAGAAGAAGCTGACGAAGCTACGAGAGACAATGGGGTATCAAACATCACATAGCACTAAGCGGATAACACAACCTATTCTCAAAGCAAAGGAGGACTCGAGCGATGCACATGAACGCTCTTTAATACCAAGGGCACTGAATTTGACGGATCATACTCTAACCAATACCAAGTTCATTCCCTCTGGCTATGATTCATGGGTGGTAAGGCACCCTTCTGCATTGAACTCGTTTGATAAATTGATGAAAGCAGCCAGTGGGAAGAGGATCATCCTATTTTTAGATTACGATGGTACCTTATCACCAATTGTAAATGACCCTGATCGCGCTTTCATGTCTGATGAGATGCGTGCAGCAGTATGTGAAGTTGCTAATTATTTTCCAACAGCAATAATTAGTGGAAGAAGCAGAGAAAAGGTAAAAGATTTCGTGAAGNTAAATAATCTATATTATGCTGGGAGCCATGGTATGGACATAATGGCACCATCGGTGCCAACTAGATCTTCTGACGGCAAGCAATGTGACATTGCTCTTGACACATATGGCAATGAAGTTCCCTTTCAACCTGCAAAGAAATTAGAGAATGGAATAAAGGAGATACAGGGTGCAAAGGTTGAGGACAATGGATTCTGCATCTCTGTACATTTCCGGCAGGTTCAAGAAAAGGATTATAAAGTTTTGGAAGAGAAAGTGAAGTCTGTGCTTGGAAAAAATCCACAATTTTGCTTGACTGAGGGTAAAAAGGTTATGGAAATAAGGCCATCTATAGAATGGAACAAAGGTCATGCAGTCGAGTATTTTCTTGACACATTAGGATTAAGCAGTTCCAGCAATATCCTTCCTGTCATACAAAGTAGAGGGCAAGGTTATCCAATTATAGTGTCTTCAATTCCAAGAGAAACAAATGCTTTGTACTCTTTGCGTGATCCATCTGAAGTACTAATCTTCTTGTCACGGTTGGCAAAATGGAGGAAAACCTCTTACTCGAGCATAATAAGGTATAGAACATCAAAGTGAAGAGTTTTGCNGTGTGCATATAGTTACTTAATTCCCACATATGGATTTTGGAGAAGTGGGATAGATAATGGTTAATTTCCTTCAAGTAGTTTGGTTTGTAAAATAACCTTGTATATTTCAAGCTTGTAAAAAGGTTCCAAGTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01392	48473	54991	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01087	otsB	EC:3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005992 trehalose biosynthetic process

GO:0008152 metabolic process

molecular_function GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001392s00030475.1	PF02358.11	Trehalose_PPase	121	305	2.10E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.015
SRR1783600	control	0.029
SRR1783602	moderate drought stress	0.122
SRR1811619	moderate drought stress	0.061

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.261
DRR006520	Root Summer glycyrrhizin high producing strain	0.123
DRR006521	Root Winter glycyrrhizin high producing strain	7.203
DRR006522	Root Winter glycyrrhizin high producing strain	6.843
DRR006523	Root Summer glycyrrhizin low producing strain	0.224
DRR006524	Root Summer glycyrrhizin low producing strain	0.248
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.204
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.270

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.134
SRR2868004	Drought Stress(Tissue:root)	2.653
SRR2967015	Control (Tissue:root)	0.909

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.254
SRR9715740	Leave	0.190
SRR9715741	Leave	0.228
SRR9715739	Root	0.000
SRR9715742	Root	1.094
SRR9715743	Root	0.684

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.056
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.611
SRR8400027	Control-Root	0.632