Gene detail information of Glyur001395s00031211.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69780.1 | 3.00E-91 | Homeobox-leucine zipper protein family |
| NR | XP_007157668.1 | 5.42E-169 | hypothetical protein PHAVU_002G088600g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LC03|ATB13_ARATH | 1.00E-121 | Homeobox-leucine zipper protein ATHB-13 |
| trEMBL | tr|V7CHL2|V7CHL2_PHAVU | 2.00E-169 | Uncharacterized protein {ECO:0000313|EMBL:ESW29662.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01395 | 21088 | 23407 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001395s00031211.1 | PF00046.24 | Homeobox | 86 | 139 | 6.00E-16 |
| Glyur001395s00031211.1 | PF02183.13 | HALZ | 141 | 184 | 2.30E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 97.207 |
| SRR1783600 | control | 97.982 |
| SRR1783602 | moderate drought stress | 121.535 |
| SRR1811619 | moderate drought stress | 121.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.912 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.978 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.266 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.258 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.594 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.513 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.894 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 44.683 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.704 |
| SRR2967015 | Control (Tissue:root) | 31.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.931 |
| SRR9715740 | Leave | 5.789 |
| SRR9715741 | Leave | 4.751 |
| SRR9715739 | Root | 7.987 |
| SRR9715742 | Root | 16.733 |
| SRR9715743 | Root | 13.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.042 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 48.328 |
| SRR8400027 | Control-Root | 51.066 |