Gene detail information of Glyur001395s00031215.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02820.1 | 4.00E-119 | myb domain protein 88 |
| NR | XP_003519765.1 | 0 | PREDICTED: pre-mRNA-splicing factor CEF1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9S7L2|MYB98_ARATH | 3.00E-19 | Transcription factor MYB98 |
| trEMBL | tr|I1JBN1|I1JBN1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G02310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01395 | 49182 | 55835 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001395s00031215.1 | PF13921.1 | Myb_DNA-bind_6 | 29 | 89 | 1.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.681 |
| SRR1783600 | control | 9.687 |
| SRR1783602 | moderate drought stress | 5.597 |
| SRR1811619 | moderate drought stress | 5.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.116 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.748 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.476 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.436 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.216 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.228 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.507 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.684 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.784 |
| SRR2967015 | Control (Tissue:root) | 11.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.743 |
| SRR9715740 | Leave | 1.084 |
| SRR9715741 | Leave | 1.417 |
| SRR9715739 | Root | 0.490 |
| SRR9715742 | Root | 5.425 |
| SRR9715743 | Root | 4.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.669 |
| SRR8749028 | MeJA induced 9h | 2.630 |
| SRR8749029 | MeJA induced 9h | 2.294 |
| SRR8749030 | Uninduced | 0.186 |
| SRR8749031 | Uninduced | 0.675 |
| SRR8749032 | Uninduced | 0.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.500 |
| SRR8400027 | Control-Root | 11.414 |