Gene detail information of Glyur001397s00036959.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G66200.16.00E-115glutamine synthase clone F11
NRXP_004512771.11.93E-161PREDICTED: glutamine synthetase nodule isozyme-like [Cicer arietinum]
COGYP_008733525.11.00E-55glutamate--ammonia ligase [Actinoplanes friuliensis DSM 7358]
Swissprottr|Q43785|GLNA3_MEDSA8.00E-163Glutamine synthetase nodule isozyme
trEMBLtr|V7C3G4|V7C3G4_PHAVU5.00E-160Glutamine synthetase {ECO:0000256|RuleBase:RU004356}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold013973762641861+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01915glnA, GLUL EC:6.3.1.2 Biosynthesis of amino acids map01230
Glyoxylate and dicarboxylate metabolismmap00630
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
Two-component systemmap02020
Glutamatergic synapsemap04724
GABAergic synapsemap04727


Gene Ontology

biological_process

GO:0006542  glutamine biosynthetic process

GO:0006807  nitrogen compound metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004356  glutamate-ammonia ligase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001397s00036959.1PF03951.14Gln-synt_N19851.30E-07
Glyur001397s00036959.1PF00120.19Gln-synt_C841772.70E-17
Glyur001397s00036959.1PF00120.19Gln-synt_C1782411.30E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control327.094
SRR1783600control325.101
SRR1783602moderate drought stress176.834
SRR1811619moderate drought stress174.756

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain341.278
DRR006520Root Summer glycyrrhizin high producing strain331.428
DRR006521Root Winter glycyrrhizin high producing strain118.356
DRR006522Root Winter glycyrrhizin high producing strain113.176
DRR006523Root Summer glycyrrhizin low producing strain235.232
DRR006524Root Summer glycyrrhizin low producing strain226.365
DRR006525Leaf Summer glycyrrhizin high producing strain14.795
DRR006526Leaf Summer glycyrrhizin high producing strain14.249

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)423.004
SRR2868004Drought Stress(Tissue:root)351.489
SRR2967015Control (Tissue:root)334.416

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave64.731
SRR9715740Leave65.612
SRR9715741Leave116.809
SRR9715739Root344.911
SRR9715742Root292.914
SRR9715743Root290.761

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h670.501
SRR8749028MeJA induced 9h616.531
SRR8749029MeJA induced 9h559.532
SRR8749030Uninduced224.329
SRR8749031Uninduced107.143
SRR8749032Uninduced324.974

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root403.766
SRR8400027Control-Root339.973

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved