Gene detail information of Glyur001406s00030094.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10670.4 | 6.00E-12 | ATP-citrate lyase A-1 |
| NR | KHN14562.1 | 5.58E-14 | ATP-citrate synthase alpha chain protein 1 [Glycine soja] |
| Swissprot | tr|Q9SGY2|ACLA1_ARATH | 3.00E-13 | ATP-citrate synthase alpha chain protein 1 |
| trEMBL | tr|I1J574|I1J574_SOYBN | 2.00E-14 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G03530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01406 | 35583 | 41466 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01648 | ACLY | EC:2.3.3.8 | Citrate cycle (TCA cycle) | map00020 |
| Carbon fixation pathways in prokaryotes | map00720 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.833 |
| SRR1783600 | control | 7.025 |
| SRR1783602 | moderate drought stress | 19.525 |
| SRR1811619 | moderate drought stress | 18.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.053 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.466 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.471 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.115 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.571 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.226 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.375 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.349 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.569 |
| SRR2967015 | Control (Tissue:root) | 10.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.624 |
| SRR9715740 | Leave | 1.880 |
| SRR9715741 | Leave | 5.239 |
| SRR9715739 | Root | 0.693 |
| SRR9715742 | Root | 2.754 |
| SRR9715743 | Root | 2.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.589 |
| SRR8749028 | MeJA induced 9h | 6.115 |
| SRR8749029 | MeJA induced 9h | 2.552 |
| SRR8749030 | Uninduced | 6.890 |
| SRR8749031 | Uninduced | 7.491 |
| SRR8749032 | Uninduced | 4.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.491 |
| SRR8400027 | Control-Root | 8.828 |