Gene detail information of Glyur001406s00030096.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23260.1 | 3.00E-65 | MMS ZWEI homologue 1 |
| NR | NP_001238527.1 | 3.08E-108 | uncharacterized protein LOC100527089 [Glycine max] |
| Swissprot | tr|Q93YP0|UEV1A_ARATH | 3.00E-87 | Ubiquitin-conjugating enzyme E2 variant 1A |
| trEMBL | tr|C6T394|C6T394_SOYBN | 1.00E-108 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G35000.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01406 | 50589 | 53968 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001406s00030096.1 | PF00179.21 | UQ_con | 56 | 152 | 2.40E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 53.899 |
| SRR1783600 | control | 53.762 |
| SRR1783602 | moderate drought stress | 54.055 |
| SRR1811619 | moderate drought stress | 53.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 184.719 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 182.098 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 152.212 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 149.007 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 180.734 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 180.443 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 76.795 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 76.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 121.933 |
| SRR2868004 | Drought Stress(Tissue:root) | 143.198 |
| SRR2967015 | Control (Tissue:root) | 143.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 90.777 |
| SRR9715740 | Leave | 91.435 |
| SRR9715741 | Leave | 96.834 |
| SRR9715739 | Root | 87.056 |
| SRR9715742 | Root | 71.854 |
| SRR9715743 | Root | 74.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 267.752 |
| SRR8749028 | MeJA induced 9h | 136.238 |
| SRR8749029 | MeJA induced 9h | 337.967 |
| SRR8749030 | Uninduced | 174.302 |
| SRR8749031 | Uninduced | 269.231 |
| SRR8749032 | Uninduced | 263.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 112.166 |
| SRR8400027 | Control-Root | 126.856 |