Gene detail information of Glyur001410s00029901.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16170.1 | 7.00E-83 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | XP_003530921.1 | 9.73E-155 | PREDICTED: uncharacterized protein LOC100810653 [Glycine max] |
| trEMBL | tr|K7MVI2|K7MVI2_SOYBN | 1.00E-146 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G53260.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01410 | 35996 | 39141 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001410s00029901.1 | PF02485.16 | Branch | 146 | 318 | 4.70E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.061 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.335 |
| SRR9715740 | Leave | 0.739 |
| SRR9715741 | Leave | 0.521 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.108 |
| SRR9715743 | Root | 0.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.230 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.307 |
| SRR8749030 | Uninduced | 0.670 |
| SRR8749031 | Uninduced | 0.791 |
| SRR8749032 | Uninduced | 0.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.010 |
| SRR8400027 | Control-Root | 0.015 |