Gene detail

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Gene detail information of Glyur001410s00029909.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38280.1	3.00E-112	PR5-like receptor kinase
NR	XP_003624353.1	0	Receptor-like kinase [Medicago truncatula]
COG	YP_001958461.1	6.00E-27	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FID6\|Y5392_ARATH	3.00E-124	Probable receptor-like protein kinase At5g39020 (Precursor)
trEMBL	tr\|G7KUC1\|G7KUC1_MEDTR	0	LRR kinase family protein {ECO:0000313\|EMBL:AES80571.1}

Sequence

Transcript Sequence

>Glyur001410s00029909.1
TTGACATCCTTGCCTCAACTTGAGTTCCTGGATTTGTCCAATAATAACCTTTTCGGACAAGTTCCCAATTTTTCATCCAAGGTGACTTTATTTACCAACGGAAATGTTAATTTGGTTGGGCCTTCTCGAGGTGCTGGAGTTCCATCACTTGTTTCTGGTCACCCAGCAAGTGGAGGCTCATCCAAAACATCAAATGCCACTTCACTTAGGCCTCTTTGGATAGCAGGGGTACTAGTGTTGAGTGCTGCAGTTATGATACTAATTTTGATTATCGGCAAACGTAAGAGGTATTTTAGTTTAATACAAAAAAATATTTCCAACAAAAAAAGAAAAAATATTGACCACAACGTGGAGGCTTTCCTGCAAATTCATACTTTGTCAATGCCAAAGCGATATAGTTATGCAGAAGTGAAAAAGATCACAAATTCATTTCGTGATAAGTTAGGTCAAGGAGGATACGGTGTTGTGTACAAAGCAAGCTTACCTGATGGTCGTCATGTGGCAGTGAAATCCAAGGGAAATGGTGAAGAATTCATAAATGAAGTTGCTAGCATTAGCAAAACGTCACATGTGAACATTGTCTCACTTTTGGGTTTTAGTTATGAGAAGAACAAGAGAGCACTAATATATGAATATATGCCCAATGGATCATTGGATCAATTCATCTATAGAGGTGGTTTCCCAAGTGCTATTTGTAATTTGGATTGGAACACATTGTTCCAAATTGCAATTGGCATTGCGCGAGGACTAGAATACTTGCATCAGGGATGTACTTCAAGAATTTTGCATCTCGATATCAAACCCCAAAATATTCTTTTGAATGAAGATTTTTGCCCAAAAATCTCTGATTTTGGATTGGCTAAAATATGCCAAAAGAAGGAGAGTATTGTATCCATGCTAGGCACAAGAGGAACTATAGGGTACATAGCACCAGAAGTATTTAGCCGAACATATGGTGGAGTTTCTCATAGATCTGATGTATACAGTTATGGCATGCTGATTGTTGAAATGATTGGAGGAAGAAAGAATCATGATAGTGGAGGGTCACATACCACTGAAATGTACTTTCCAGACTGGATTTATAGGGATCTTGAGCAAGGTCATGCTCCTATAAACTGTTTGGCAATGTCAGAGGAAGAAAATGATATGGTAAGGAAGATTACTATGGTGAGTCTATGGTGCATTCAAATGAATCCGTCAGATAGACCATCAATGAGTAAAGTAATAGAAATGCTACAAGGACCACTTCAGTCAATGTCATATCCTCCTAAGCCCACCTTGTATTCTCCTGAAAGGCCATCATTGCAAATTTCATATGTTTCTTCCAGTAATTTGTCCGAGACAAATTCAACGAGCTTA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01410	71155	72783	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001410s00029909.1	PF00069.20	Pkinase	146	410	4.30E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.213
SRR1783600	control	0.169
SRR1783602	moderate drought stress	0.055
SRR1811619	moderate drought stress	0.072

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.316
DRR006520	Root Summer glycyrrhizin high producing strain	1.208
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.447
DRR006524	Root Summer glycyrrhizin low producing strain	2.796
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.438
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.373

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.696
SRR2868004	Drought Stress(Tissue:root)	3.979
SRR2967015	Control (Tissue:root)	3.165

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.312
SRR9715740	Leave	0.047
SRR9715741	Leave	0.197
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.781
SRR8749028	MeJA induced 9h	0.371
SRR8749029	MeJA induced 9h	0.789
SRR8749030	Uninduced	0.377
SRR8749031	Uninduced	0.561
SRR8749032	Uninduced	0.927

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.105
SRR8400027	Control-Root	0.612