Gene detail information of Glyur001416s00028538.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79180.1 | 8.00E-34 | myb domain protein 63 |
| NR | KHN48895.1 | 1.16E-110 | Myb-related protein Zm1 [Glycine soja] |
| Swissprot | tr|P20024|MYB1_MAIZE | 1.00E-31 | Myb-related protein Zm1 |
| trEMBL | tr|K7L768|K7L768_SOYBN | 1.00E-109 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G17861.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01416 | 9174 | 11702 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001416s00028538.1 | PF00249.26 | Myb_DNA-binding | 16 | 72 | 4.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.211 |
| SRR1783600 | control | 0.297 |
| SRR1783602 | moderate drought stress | 0.044 |
| SRR1811619 | moderate drought stress | 0.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.162 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.123 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.327 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.383 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.062 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.695 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.285 |
| SRR2967015 | Control (Tissue:root) | 2.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.262 |
| SRR9715740 | Leave | 4.623 |
| SRR9715741 | Leave | 6.594 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.527 |
| SRR9715743 | Root | 0.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.334 |
| SRR8749028 | MeJA induced 9h | 4.755 |
| SRR8749029 | MeJA induced 9h | 0.134 |
| SRR8749030 | Uninduced | 7.831 |
| SRR8749031 | Uninduced | 0.323 |
| SRR8749032 | Uninduced | 0.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.818 |
| SRR8400027 | Control-Root | 2.446 |