Gene detail information of Glyur001419s00035729.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09760.1 | 0 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_004502918.1 | 0 | PREDICTED: probable pectinesterase/pectinesterase inhibitor 51-like [Cicer arietinum] |
| COG | YP_004318102.1 | 5.00E-63 | pectinesterase [Sphingobacterium sp. 21] |
| Swissprot | tr|Q9LXD9|PME51_ARATH | 0 | Pectinesterase 51 (Precursor) |
| trEMBL | tr|G7JBH5|G7JBH5_MEDTR | 0 | Pectinesterase/pectinesterase inhibitor {ECO:0000313|EMBL:AES72835.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01419 | 268 | 2631 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001419s00035729.1 | PF04043.10 | PMEI | 65 | 214 | 6.10E-18 |
| Glyur001419s00035729.1 | PF01095.14 | Pectinesterase | 260 | 569 | 3.70E-121 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.283 |
| SRR1783600 | control | 9.148 |
| SRR1783602 | moderate drought stress | 5.089 |
| SRR1811619 | moderate drought stress | 5.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.955 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.916 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.291 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.293 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.422 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.554 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.843 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.472 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.970 |
| SRR2967015 | Control (Tissue:root) | 2.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.713 |
| SRR9715740 | Leave | 2.046 |
| SRR9715741 | Leave | 1.610 |
| SRR9715739 | Root | 3.587 |
| SRR9715742 | Root | 2.739 |
| SRR9715743 | Root | 2.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.527 |
| SRR8749028 | MeJA induced 9h | 0.387 |
| SRR8749029 | MeJA induced 9h | 0.038 |
| SRR8749030 | Uninduced | 0.062 |
| SRR8749031 | Uninduced | 0.022 |
| SRR8749032 | Uninduced | 0.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.234 |
| SRR8400027 | Control-Root | 5.458 |