Gene detail

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Gene detail information of Glyur001419s00035730.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18660.2	0	plant glycogenin-like starch initiation protein 1
NR	XP_006581757.1	0	PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like [Glycine max]
COG	YP_769553.1	6.00E-21	glycosyl transferase (sulfolipid biosynthesis) protein [Rhizobium leguminosarum bv. viciae 3841]
Swissprot	tr\|Q9LSB1\|GUX1_ARATH	0	UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
trEMBL	tr\|K7KV68\|K7KV68_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G15690.2}

Sequence

Transcript Sequence

>Glyur001419s00035730.1
ATGTCTGCTGTAACTTATTTCTCTTATATTATCATCTACAGTGAAGATTTATACAAAAGAAGACTACCAAGAAGTAAAGTGAAGGATGTAGAGAAGCCTTTCCACTTATCTATCCAAGATAGAAGCTCAAGATGCAAGTTTTCTTTCTTGAAACTTATCCTACTGATAACCATTTGCGGCACTTTTGTAATGCTCTTGTACTCTCCAGAGGTTTACAATACCAACCATTTATCAAGCTCTGGCTCTCGGTGGATATGGGGTGGCTTAGATCCTCGATATATATCGAATATAGAGACTGAATGGGATGATATAATGAAAATCACAGAGAAGCTAACAGGAAAAGATGAGTTCCAAGGCATTGGACTTGTAAATTTCAACAAGACTGAAACTGCNAAGTGGAAGCATCATTTTCCTGATGCCACACATGTTGTTCTGCCTCTGGAGTATGCTGCAAACAATGTGACATGGGAGTCTCTATACCCAGAATGGATTGATGAGGAAGAAGAAACTGAAGTTCCTGTTTGCCCTTCTCTACCGAGTCTTAGATCTCCTGGTACAAGACTTAACCTCATTGCTGTCAAGCTTCCTTGTCGGAATGGGGGGAATTGGTCTAGAGATGTTGCTCGTTTGCACCTTCAGCTTGCAGCTGCTGCACTTGCAACCTCTTTCAAAGGCAATTACCCCTTATATGTGCTCTTCATTNCCAACTGCTTTCCAATACCAAACCTGTTTACCTGCAAAGAACTGATTGGACGTGAAAGGAATGTGTGGTTATACAGACCAAACTTGAGTGTTTTGAGAGAAAAAGTCCAGCTTCCAGTTGGGTCTTGTGAACTTGCACTTCCTATGAGAGGCAAAGAACTGGTATACAATGGAAATGCTCCCAGAGAAGCCTATGCAACAATTCTGCATTCAGCTCATGTTTATGTTTGTGGGGCTATAGCTGCTGCACAGAGCATTAGGATGTCTGGATCAACTCGAGACCTTGTAATACTTGTTGATGAGACAATCAGCAGCTATCACAGAAGTGGTTTGGAAGCAGCAGGGTGGAAGGTCAGAACAATCCAGAGAATCAGAAACCCAAAAGCTGAAAAAGATGCCTACAATGAATGGAACTACAGCAAGTTCCGGTTATGGCAGCTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATACTCAGAAACATAGATTTTCTATTTGGAATGCCAGAGNTCACTGCTACCGGCAACAATGCCACTCTTTTTAACTCGGGTGTGATGGTGGTTGAGCCATCAAACTGCACATTCCAGCTCCTGATGGATCATATAAATGAGATTGAGTCCTACAATGGAGGGGATCAGGGGTATTTGAATGAAATATTCACATGGTGGCACAGGATACCAAGGCACATGAACTTCTTGAAGCATTTCTGGATTGGTGATGAGGAAGAGAAGAAGCAAATGAAGACCATGTTGTTTGGTGCTGACCCTCCAATTCTCTATGTTCTTCACTATCTAGGCATGAAGCCATGGTTATGCTTCCGGGACTATGATTGCAACTGGAATTTTGATATTTTTCATGAGTTTGCAAGTGATGTTGCACATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTGCAGCAGTTTTGCCTGTTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAGGCAGGCTGAGATAGCAAACTACACTGATGGGCATTGGAGAATCAAAGTTAAAGATCACCGTTTGAAGAAATGCATAGATAATTTGTGCAACTGGAAAAGCATGTTGCGGCACTGGGGAGAGACTAATTGGACAGATGATGAGTCTTTAACTCCAACACCTCCCACCATTACTACATCATCTCTTTCTGCTTTATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01419	3637	6007	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009834 plant-type secondary cell wall biogenesis

GO:0045492 xylan biosynthetic process

cellular_component GO:0005794 Golgi apparatus molecular_function GO:0015020 glucuronosyltransferase activity GO:0016757 transferase activity, transferring glycosyl groups "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001419s00035730.1	PF01501.15	Glyco_transf_8	301	510	7.50E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.221
SRR1783600	control	3.199
SRR1783602	moderate drought stress	1.614
SRR1811619	moderate drought stress	1.568

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.373
DRR006520	Root Summer glycyrrhizin high producing strain	3.374
DRR006521	Root Winter glycyrrhizin high producing strain	0.517
DRR006522	Root Winter glycyrrhizin high producing strain	0.477
DRR006523	Root Summer glycyrrhizin low producing strain	3.025
DRR006524	Root Summer glycyrrhizin low producing strain	3.031
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.562
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.677

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.812
SRR2868004	Drought Stress(Tissue:root)	3.914
SRR2967015	Control (Tissue:root)	3.902

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.872
SRR9715740	Leave	0.472
SRR9715741	Leave	0.343
SRR9715739	Root	0.156
SRR9715742	Root	3.859
SRR9715743	Root	2.683

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.407
SRR8749028	MeJA induced 9h	0.101
SRR8749029	MeJA induced 9h	0.129
SRR8749030	Uninduced	0.073
SRR8749031	Uninduced	0.061
SRR8749032	Uninduced	0.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.591
SRR8400027	Control-Root	9.657