Gene detail information of Glyur001419s00035732.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09790.2 | 5.00E-135 | ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 |
| NR | XP_004502916.1 | 0 | PREDICTED: histone-lysine N-methyltransferase ATXR5-like [Cicer arietinum] |
| Swissprot | tr|B9RU15|ATXR5_RICCO | 0 | Probable Histone-lysine N-methyltransferase ATXR5 (Precursor) |
| trEMBL | tr|I1JY36|I1JY36_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G39260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01419 | 17213 | 22169 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001419s00035732.1 | PF00628.24 | PHD | 63 | 110 | 1.40E-11 |
| Glyur001419s00035732.1 | PF00856.23 | SET | 301 | 367 | 4.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.202 |
| SRR1783600 | control | 2.232 |
| SRR1783602 | moderate drought stress | 1.049 |
| SRR1811619 | moderate drought stress | 1.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.676 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.539 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.499 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.457 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.646 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.809 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.904 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.210 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.130 |
| SRR2967015 | Control (Tissue:root) | 3.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.366 |
| SRR9715740 | Leave | 1.616 |
| SRR9715741 | Leave | 2.171 |
| SRR9715739 | Root | 0.946 |
| SRR9715742 | Root | 2.372 |
| SRR9715743 | Root | 2.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.548 |
| SRR8749028 | MeJA induced 9h | 7.634 |
| SRR8749029 | MeJA induced 9h | 6.600 |
| SRR8749030 | Uninduced | 3.981 |
| SRR8749031 | Uninduced | 3.193 |
| SRR8749032 | Uninduced | 2.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.848 |
| SRR8400027 | Control-Root | 9.529 |